Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5m20
         (698 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118425-1|AAM48454.1|  111|Drosophila melanogaster RH09938p pro...    97   3e-20
AY071208-1|AAL48830.1|  111|Drosophila melanogaster RE25263p pro...    97   3e-20
AE014134-3014|AAN11021.1|  111|Drosophila melanogaster CG10652-P...    97   3e-20
AE014134-3013|AAF53738.1|  111|Drosophila melanogaster CG10652-P...    97   3e-20

>AY118425-1|AAM48454.1|  111|Drosophila melanogaster RH09938p
           protein.
          Length = 111

 Score = 96.7 bits (230), Expect = 3e-20
 Identities = 43/50 (86%), Positives = 46/50 (92%)
 Frame = +2

Query: 545 RKSEIEYYALLAKTGVHHYSGNXIELGTACGKYYRVCTLAITDPGDSDII 694
           RKSEIEYYA+LAKT V HYSG  IELGTACGKY+RVCTL+ITDPGDSDII
Sbjct: 56  RKSEIEYYAMLAKTEVQHYSGTNIELGTACGKYFRVCTLSITDPGDSDII 105



 Score = 84.6 bits (200), Expect = 1e-16
 Identities = 41/55 (74%), Positives = 44/55 (80%)
 Frame = +3

Query: 54  MVAAKKQKKTXESINSRLALVMKSGKXCLGYKQTLKTLRQGRAXLXIIAXNAPPL 218
           MVA KKQKK  ES N+RL LVMKSGK CLGYKQTLKTLRQG+A L +IA N P L
Sbjct: 1   MVAVKKQKKALESTNARLELVMKSGKYCLGYKQTLKTLRQGKAKLVLIASNTPAL 55


>AY071208-1|AAL48830.1|  111|Drosophila melanogaster RE25263p
           protein.
          Length = 111

 Score = 96.7 bits (230), Expect = 3e-20
 Identities = 43/50 (86%), Positives = 46/50 (92%)
 Frame = +2

Query: 545 RKSEIEYYALLAKTGVHHYSGNXIELGTACGKYYRVCTLAITDPGDSDII 694
           RKSEIEYYA+LAKT V HYSG  IELGTACGKY+RVCTL+ITDPGDSDII
Sbjct: 56  RKSEIEYYAMLAKTEVQHYSGTNIELGTACGKYFRVCTLSITDPGDSDII 105



 Score = 86.6 bits (205), Expect = 3e-17
 Identities = 42/55 (76%), Positives = 45/55 (81%)
 Frame = +3

Query: 54  MVAAKKQKKTXESINSRLALVMKSGKXCLGYKQTLKTLRQGRAXLXIIAXNAPPL 218
           MVA KKQKK  ES N+RLALVMKSGK CLGYKQTLKTLRQG+A L +IA N P L
Sbjct: 1   MVAVKKQKKALESTNARLALVMKSGKYCLGYKQTLKTLRQGKAKLVLIASNTPAL 55


>AE014134-3014|AAN11021.1|  111|Drosophila melanogaster CG10652-PB,
           isoform B protein.
          Length = 111

 Score = 96.7 bits (230), Expect = 3e-20
 Identities = 43/50 (86%), Positives = 46/50 (92%)
 Frame = +2

Query: 545 RKSEIEYYALLAKTGVHHYSGNXIELGTACGKYYRVCTLAITDPGDSDII 694
           RKSEIEYYA+LAKT V HYSG  IELGTACGKY+RVCTL+ITDPGDSDII
Sbjct: 56  RKSEIEYYAMLAKTEVQHYSGTNIELGTACGKYFRVCTLSITDPGDSDII 105



 Score = 86.6 bits (205), Expect = 3e-17
 Identities = 42/55 (76%), Positives = 45/55 (81%)
 Frame = +3

Query: 54  MVAAKKQKKTXESINSRLALVMKSGKXCLGYKQTLKTLRQGRAXLXIIAXNAPPL 218
           MVA KKQKK  ES N+RLALVMKSGK CLGYKQTLKTLRQG+A L +IA N P L
Sbjct: 1   MVAVKKQKKALESTNARLALVMKSGKYCLGYKQTLKTLRQGKAKLVLIASNTPAL 55


>AE014134-3013|AAF53738.1|  111|Drosophila melanogaster CG10652-PA,
           isoform A protein.
          Length = 111

 Score = 96.7 bits (230), Expect = 3e-20
 Identities = 43/50 (86%), Positives = 46/50 (92%)
 Frame = +2

Query: 545 RKSEIEYYALLAKTGVHHYSGNXIELGTACGKYYRVCTLAITDPGDSDII 694
           RKSEIEYYA+LAKT V HYSG  IELGTACGKY+RVCTL+ITDPGDSDII
Sbjct: 56  RKSEIEYYAMLAKTEVQHYSGTNIELGTACGKYFRVCTLSITDPGDSDII 105



 Score = 86.6 bits (205), Expect = 3e-17
 Identities = 42/55 (76%), Positives = 45/55 (81%)
 Frame = +3

Query: 54  MVAAKKQKKTXESINSRLALVMKSGKXCLGYKQTLKTLRQGRAXLXIIAXNAPPL 218
           MVA KKQKK  ES N+RLALVMKSGK CLGYKQTLKTLRQG+A L +IA N P L
Sbjct: 1   MVAVKKQKKALESTNARLALVMKSGKYCLGYKQTLKTLRQGKAKLVLIASNTPAL 55


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,038,054
Number of Sequences: 53049
Number of extensions: 411197
Number of successful extensions: 656
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)