Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5m20
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032631-5|CAA21573.1|  113|Caenorhabditis elegans Hypothetical ...    97   8e-21
AC006816-1|AAN39661.1|  401|Caenorhabditis elegans Hypothetical ...    29   2.4  
AB071420-1|BAB86940.1|  401|Caenorhabditis elegans 2-amino-3-car...    29   2.4  
Z82277-3|CAB05249.2|  495|Caenorhabditis elegans Hypothetical pr...    28   5.6  

>AL032631-5|CAA21573.1|  113|Caenorhabditis elegans Hypothetical
           protein Y106G6H.3 protein.
          Length = 113

 Score = 97.5 bits (232), Expect = 8e-21
 Identities = 42/50 (84%), Positives = 47/50 (94%)
 Frame = +2

Query: 545 RKSEIEYYALLAKTGVHHYSGNXIELGTACGKYYRVCTLAITDPGDSDII 694
           RKSEIEYYA+LAKTGVHHY+GN IELGTACG+ +RVCTLA+TD GDSDII
Sbjct: 56  RKSEIEYYAMLAKTGVHHYNGNNIELGTACGRLFRVCTLAVTDAGDSDII 105



 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 33/55 (60%), Positives = 41/55 (74%)
 Frame = +3

Query: 54  MVAAKKQKKTXESINSRLALVMKSGKXCLGYKQTLKTLRQGRAXLXIIAXNAPPL 218
           M  A K +K  E+INSRL++VMK+G+  LGYKQTLK+L  G+A L IIA N PPL
Sbjct: 1   MAPAAKPQKNAENINSRLSMVMKTGQYVLGYKQTLKSLLNGKAKLVIIANNTPPL 55


>AC006816-1|AAN39661.1|  401|Caenorhabditis elegans Hypothetical
           protein Y71D11A.3b protein.
          Length = 401

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
 Frame = -3

Query: 354 LSSXXPYFCELFX*---TTK--GIHTSLSVRLHMHPFDKY-WE 244
           LS+  P FCE F     TTK  GI   LSV L +HP+D + W+
Sbjct: 200 LSTIMPGFCEFFENWGLTTKTPGICEELSVVLFVHPWDMHMWD 242


>AB071420-1|BAB86940.1|  401|Caenorhabditis elegans
           2-amino-3-carboxylmuconate-6-semialdehydedecarboxylase
           protein.
          Length = 401

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
 Frame = -3

Query: 354 LSSXXPYFCELFX*---TTK--GIHTSLSVRLHMHPFDKY-WE 244
           LS+  P FCE F     TTK  GI   LSV L +HP+D + W+
Sbjct: 200 LSTIMPGFCEFFENWGLTTKTPGICEELSVVLFVHPWDMHMWD 242


>Z82277-3|CAB05249.2|  495|Caenorhabditis elegans Hypothetical
           protein LLC1.3 protein.
          Length = 495

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 27  GFISIYAPKMVAAKKQKKTXESINSRLALV 116
           GF +I  P  V AKK   + E+IN+R  L+
Sbjct: 138 GFATIVGPNTVQAKKNDGSVETINARNILI 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,346,917
Number of Sequences: 27780
Number of extensions: 213513
Number of successful extensions: 337
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)