Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5m06
         (406 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   0.86 
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   4.6  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.4 bits (48), Expect = 0.86
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -3

Query: 218 IPVGVWYGRRCQNISVQTRR 159
           +P+GV Y  +C+ + +Q +R
Sbjct: 55  VPIGVLYCMKCECVPLQKKR 74


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 30  GTKFVSHVYNRSIRTHSTTVKRTDSSHRLKSQVVDKRPRRSL 155
           GT+F+S+ +  S+R  +  ++ T SS R       +R  R L
Sbjct: 265 GTQFISNTWQNSLR--AADIQPTLSSIRHPESNPSERVMREL 304


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,375
Number of Sequences: 336
Number of extensions: 1361
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8752267
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)