Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5m05
         (544 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73906-7|CAA98119.2|  428|Caenorhabditis elegans Hypothetical pr...    29   1.6  
U41271-3|AAP31439.1|  577|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U41271-2|AAA82444.3|  713|Caenorhabditis elegans Hypothetical pr...    28   5.0  

>Z73906-7|CAA98119.2|  428|Caenorhabditis elegans Hypothetical
           protein D2030.7 protein.
          Length = 428

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 285 IKCRTVFTTSLLVTCPTSIKPIRT 214
           ++C+ VF TS + T P S  P+RT
Sbjct: 163 VECQNVFPTSFIKTEPVSTSPVRT 186


>U41271-3|AAP31439.1|  577|Caenorhabditis elegans Hypothetical
           protein C46H3.2b protein.
          Length = 577

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 271 GVHHFPVGNLSDFNQTDKNCKF 206
           G+HH   GNLS FN +  N +F
Sbjct: 489 GLHHISSGNLSSFNSSLSNDQF 510


>U41271-2|AAA82444.3|  713|Caenorhabditis elegans Hypothetical
           protein C46H3.2a protein.
          Length = 713

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 271 GVHHFPVGNLSDFNQTDKNCKF 206
           G+HH   GNLS FN +  N +F
Sbjct: 625 GLHHISSGNLSSFNSSLSNDQF 646


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,102,606
Number of Sequences: 27780
Number of extensions: 240337
Number of successful extensions: 416
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)