Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5m05
         (544 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    22   4.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   4.6  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   6.1  

>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = +2

Query: 428 FHQNRHFQRFMNLTFLILIYLKQTRIKLKYYGHTYRKKK 544
           FH NR+  R   +     + L + +IK+ +     + KK
Sbjct: 27  FHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 65


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = +2

Query: 428 FHQNRHFQRFMNLTFLILIYLKQTRIKLKYYGHTYRKKK 544
           FH NR+  R   +     + L + +IK+ +     + KK
Sbjct: 289 FHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 327


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 82  HSRS*NSEKH*FFSSHDNTPK 20
           +S   NSEKH  F  H N  K
Sbjct: 101 YSNMLNSEKHASFLKHSNIVK 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,774
Number of Sequences: 438
Number of extensions: 2876
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)