Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5m01
(416 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC105606-1|AAI05607.1| 97|Homo sapiens HELLS protein protein. 33 0.38
BX538033-1|CAD97978.1| 822|Homo sapiens hypothetical protein pr... 32 0.67
AL138759-2|CAH70222.1| 192|Homo sapiens helicase, lymphoid-spec... 32 0.67
AL138759-1|CAD13191.1| 838|Homo sapiens helicase, lymphoid-spec... 32 0.67
AF155827-1|AAF82262.1| 838|Homo sapiens proliferation-associate... 32 0.67
AB113249-1|BAD24805.1| 782|Homo sapiens lymphoid specific helic... 32 0.67
AB113248-1|BAD24804.1| 809|Homo sapiens lymphoid specific helic... 32 0.67
AB102723-1|BAD10851.1| 884|Homo sapiens lymphoid specific helic... 32 0.67
AB102722-1|BAD10850.1| 315|Homo sapiens lymphoid specific helic... 32 0.67
AB102721-1|BAD10849.1| 740|Homo sapiens lymphoid specific helic... 32 0.67
AB102720-1|BAD10848.1| 345|Homo sapiens lymphoid specific helic... 32 0.67
AB102719-1|BAD10847.1| 708|Homo sapiens lymphoid specific helic... 32 0.67
AB102718-1|BAD10846.1| 806|Homo sapiens lymphoid specific helic... 32 0.67
AB102717-1|BAD10845.1| 129|Homo sapiens lymphoid specific helic... 32 0.67
AF047368-1|AAF24858.1| 1011|Homo sapiens nebulette protein. 32 0.88
BC041089-1|AAH41089.1| 1390|Homo sapiens polymerase (RNA) III (D... 31 1.5
AY091459-1|AAM12029.1| 374|Homo sapiens RNA polymerase III subu... 31 1.5
AL512628-1|CAI16466.1| 1390|Homo sapiens polymerase (RNA) III (D... 31 1.5
AF021351-1|AAB86536.1| 1391|Homo sapiens RNA polymerase III larg... 31 1.5
Y16241-1|CAA76130.1| 1014|Homo sapiens nebulette protein. 29 4.7
BC110453-1|AAI10454.1| 1014|Homo sapiens nebulette protein. 29 4.7
BC110452-1|AAI10453.1| 716|Homo sapiens NEBL protein protein. 29 4.7
AL157398-5|CAI41193.1| 231|Homo sapiens nebulette protein. 29 4.7
AL157398-4|CAC19642.1| 1014|Homo sapiens nebulette protein. 29 4.7
D82880-1|BAA11621.1| 853|Homo sapiens human ras GTPase-activati... 29 8.2
>BC105606-1|AAI05607.1| 97|Homo sapiens HELLS protein protein.
Length = 97
Score = 33.1 bits (72), Expect = 0.38
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = +2
Query: 167 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 346
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 30 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88
Query: 347 ERKMSKRKK 373
++K K+KK
Sbjct: 89 QKKKKKKKK 97
>BX538033-1|CAD97978.1| 822|Homo sapiens hypothetical protein
protein.
Length = 822
Score = 32.3 bits (70), Expect = 0.67
Identities = 22/83 (26%), Positives = 40/83 (48%)
Frame = +2
Query: 167 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 346
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 14 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 72
Query: 347 ERKMSKRKKKVINNNKYILFKKK 415
++ ++KK+ + K L KK
Sbjct: 73 QQLEEQKKKEKLERKKESLKVKK 95
>AL138759-2|CAH70222.1| 192|Homo sapiens helicase,
lymphoid-specific protein.
Length = 192
Score = 32.3 bits (70), Expect = 0.67
Identities = 22/83 (26%), Positives = 40/83 (48%)
Frame = +2
Query: 167 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 346
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 14 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 72
Query: 347 ERKMSKRKKKVINNNKYILFKKK 415
++ ++KK+ + K L KK
Sbjct: 73 QQLEEQKKKEKLERKKESLKVKK 95
>AL138759-1|CAD13191.1| 838|Homo sapiens helicase,
lymphoid-specific protein.
Length = 838
Score = 32.3 bits (70), Expect = 0.67
Identities = 22/83 (26%), Positives = 40/83 (48%)
Frame = +2
Query: 167 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 346
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 30 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88
Query: 347 ERKMSKRKKKVINNNKYILFKKK 415
++ ++KK+ + K L KK
Sbjct: 89 QQLEEQKKKEKLERKKESLKVKK 111
>AF155827-1|AAF82262.1| 838|Homo sapiens proliferation-associated
SNF2-like protein protein.
Length = 838
Score = 32.3 bits (70), Expect = 0.67
Identities = 22/83 (26%), Positives = 40/83 (48%)
Frame = +2
Query: 167 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 346
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 30 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88
Query: 347 ERKMSKRKKKVINNNKYILFKKK 415
++ ++KK+ + K L KK
Sbjct: 89 QQLEEQKKKEKLERKKESLKVKK 111
>AB113249-1|BAD24805.1| 782|Homo sapiens lymphoid specific helicase
variant10 protein.
Length = 782
Score = 32.3 bits (70), Expect = 0.67
Identities = 22/83 (26%), Positives = 40/83 (48%)
Frame = +2
Query: 167 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 346
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 30 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88
Query: 347 ERKMSKRKKKVINNNKYILFKKK 415
++ ++KK+ + K L KK
Sbjct: 89 QQLEEQKKKEKLERKKESLKVKK 111
>AB113248-1|BAD24804.1| 809|Homo sapiens lymphoid specific helicase
variant9 protein.
Length = 809
Score = 32.3 bits (70), Expect = 0.67
Identities = 22/83 (26%), Positives = 40/83 (48%)
Frame = +2
Query: 167 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 346
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 30 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88
Query: 347 ERKMSKRKKKVINNNKYILFKKK 415
++ ++KK+ + K L KK
Sbjct: 89 QQLEEQKKKEKLERKKESLKVKK 111
>AB102723-1|BAD10851.1| 884|Homo sapiens lymphoid specific helicase
variant8 protein.
Length = 884
Score = 32.3 bits (70), Expect = 0.67
Identities = 22/83 (26%), Positives = 40/83 (48%)
Frame = +2
Query: 167 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 346
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 30 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88
Query: 347 ERKMSKRKKKVINNNKYILFKKK 415
++ ++KK+ + K L KK
Sbjct: 89 QQLEEQKKKEKLERKKESLKVKK 111
>AB102722-1|BAD10850.1| 315|Homo sapiens lymphoid specific helicase
variant7 protein.
Length = 315
Score = 32.3 bits (70), Expect = 0.67
Identities = 22/83 (26%), Positives = 40/83 (48%)
Frame = +2
Query: 167 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 346
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 30 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88
Query: 347 ERKMSKRKKKVINNNKYILFKKK 415
++ ++KK+ + K L KK
Sbjct: 89 QQLEEQKKKEKLERKKESLKVKK 111
>AB102721-1|BAD10849.1| 740|Homo sapiens lymphoid specific helicase
variant6 protein.
Length = 740
Score = 32.3 bits (70), Expect = 0.67
Identities = 22/83 (26%), Positives = 40/83 (48%)
Frame = +2
Query: 167 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 346
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 30 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88
Query: 347 ERKMSKRKKKVINNNKYILFKKK 415
++ ++KK+ + K L KK
Sbjct: 89 QQLEEQKKKEKLERKKESLKVKK 111
>AB102720-1|BAD10848.1| 345|Homo sapiens lymphoid specific helicase
variant5 protein.
Length = 345
Score = 32.3 bits (70), Expect = 0.67
Identities = 22/83 (26%), Positives = 40/83 (48%)
Frame = +2
Query: 167 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 346
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 30 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88
Query: 347 ERKMSKRKKKVINNNKYILFKKK 415
++ ++KK+ + K L KK
Sbjct: 89 QQLEEQKKKEKLERKKESLKVKK 111
>AB102719-1|BAD10847.1| 708|Homo sapiens lymphoid specific helicase
variant4 protein.
Length = 708
Score = 32.3 bits (70), Expect = 0.67
Identities = 22/83 (26%), Positives = 40/83 (48%)
Frame = +2
Query: 167 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 346
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 30 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88
Query: 347 ERKMSKRKKKVINNNKYILFKKK 415
++ ++KK+ + K L KK
Sbjct: 89 QQLEEQKKKEKLERKKESLKVKK 111
>AB102718-1|BAD10846.1| 806|Homo sapiens lymphoid specific helicase
variant3 protein.
Length = 806
Score = 32.3 bits (70), Expect = 0.67
Identities = 22/83 (26%), Positives = 40/83 (48%)
Frame = +2
Query: 167 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 346
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 30 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88
Query: 347 ERKMSKRKKKVINNNKYILFKKK 415
++ ++KK+ + K L KK
Sbjct: 89 QQLEEQKKKEKLERKKESLKVKK 111
>AB102717-1|BAD10845.1| 129|Homo sapiens lymphoid specific helicase
variant2 protein.
Length = 129
Score = 32.3 bits (70), Expect = 0.67
Identities = 22/83 (26%), Positives = 40/83 (48%)
Frame = +2
Query: 167 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 346
M E++ E A + + K+L K S +S + + + LEK NI Y ++ M+
Sbjct: 30 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88
Query: 347 ERKMSKRKKKVINNNKYILFKKK 415
++ ++KK+ + K L KK
Sbjct: 89 QQLEEQKKKEKLERKKESLKVKK 111
>AF047368-1|AAF24858.1| 1011|Homo sapiens nebulette protein.
Length = 1011
Score = 31.9 bits (69), Expect = 0.88
Identities = 25/99 (25%), Positives = 47/99 (47%)
Frame = +2
Query: 74 TNCQAVGH*KNISSRIQAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYN 253
T+ + H KNI + I ++KG K+++ N ++ +V E + +L+S
Sbjct: 69 TDSPMLTHVKNIGAFISEAKYKGTIKADLSNSLYKRMPATIDSVFAGE--VTQLQSEVAY 126
Query: 254 KSNMDQLIAIVNFLEKKNINYILNVMPVMQDERKMSKRK 370
K NM L I+++ K + + M V + + +S RK
Sbjct: 127 KQNM-MLPRILSYAHMKEPPEVKHAMEVNKHQSNISYRK 164
>BC041089-1|AAH41089.1| 1390|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide A, 155kDa protein.
Length = 1390
Score = 31.1 bits (67), Expect = 1.5
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +3
Query: 30 ITDKCSKRKVCLH---HKRIARLLGIKKIYHQEY---KRVVSKVYKN 152
I+DKC K+ +C H + G+ KI H++Y K+VV + N
Sbjct: 146 ISDKCRKKNICHHCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSN 192
>AY091459-1|AAM12029.1| 374|Homo sapiens RNA polymerase III subunit
RPC155-A protein.
Length = 374
Score = 31.1 bits (67), Expect = 1.5
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +3
Query: 30 ITDKCSKRKVCLH---HKRIARLLGIKKIYHQEY---KRVVSKVYKN 152
I+DKC K+ +C H + G+ KI H++Y K+VV + N
Sbjct: 146 ISDKCRKKNICHHCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSN 192
>AL512628-1|CAI16466.1| 1390|Homo sapiens polymerase (RNA) III (DNA
directed) (155kD) (RPC155) protein.
Length = 1390
Score = 31.1 bits (67), Expect = 1.5
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +3
Query: 30 ITDKCSKRKVCLH---HKRIARLLGIKKIYHQEY---KRVVSKVYKN 152
I+DKC K+ +C H + G+ KI H++Y K+VV + N
Sbjct: 146 ISDKCRKKNICHHCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSN 192
>AF021351-1|AAB86536.1| 1391|Homo sapiens RNA polymerase III largest
subunit protein.
Length = 1391
Score = 31.1 bits (67), Expect = 1.5
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +3
Query: 30 ITDKCSKRKVCLH---HKRIARLLGIKKIYHQEY---KRVVSKVYKN 152
I+DKC K+ +C H + G+ KI H++Y K+VV + N
Sbjct: 146 ISDKCRKKNICHHCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSN 192
>Y16241-1|CAA76130.1| 1014|Homo sapiens nebulette protein.
Length = 1014
Score = 29.5 bits (63), Expect = 4.7
Identities = 22/99 (22%), Positives = 43/99 (43%)
Frame = +2
Query: 74 TNCQAVGH*KNISSRIQAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYN 253
T+ + H KNI + I ++KG K+++ N ++ +V E + +L+S
Sbjct: 69 TDSPMLNHVKNIGAFISEAKYKGTIKADLSNSLYKRMPATIDSVFAGE--VTQLQSEVAY 126
Query: 254 KSNMDQLIAIVNFLEKKNINYILNVMPVMQDERKMSKRK 370
K D ++ K + + M V + + +S RK
Sbjct: 127 KQKHDAAKGFSDYAHMKEPPEVKHAMEVNKHQSNISYRK 165
>BC110453-1|AAI10454.1| 1014|Homo sapiens nebulette protein.
Length = 1014
Score = 29.5 bits (63), Expect = 4.7
Identities = 22/99 (22%), Positives = 43/99 (43%)
Frame = +2
Query: 74 TNCQAVGH*KNISSRIQAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYN 253
T+ + H KNI + I ++KG K+++ N ++ +V E + +L+S
Sbjct: 69 TDSPMLNHVKNIGAFISEAKYKGTIKADLSNSLYKRMPATIDSVFAGE--VTQLQSEVAY 126
Query: 254 KSNMDQLIAIVNFLEKKNINYILNVMPVMQDERKMSKRK 370
K D ++ K + + M V + + +S RK
Sbjct: 127 KQKHDAAKGFSDYAHMKEPPEVKHAMEVNKHQSNISYRK 165
>BC110452-1|AAI10453.1| 716|Homo sapiens NEBL protein protein.
Length = 716
Score = 29.5 bits (63), Expect = 4.7
Identities = 22/99 (22%), Positives = 43/99 (43%)
Frame = +2
Query: 74 TNCQAVGH*KNISSRIQAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYN 253
T+ + H KNI + I ++KG K+++ N ++ +V E + +L+S
Sbjct: 69 TDSPMLNHVKNIGAFISEAKYKGTIKADLSNSLYKRMPATIDSVFAGE--VTQLQSEVAY 126
Query: 254 KSNMDQLIAIVNFLEKKNINYILNVMPVMQDERKMSKRK 370
K D ++ K + + M V + + +S RK
Sbjct: 127 KQKHDAAKGFSDYAHMKEPPEVKHAMEVNKHQSNISYRK 165
>AL157398-5|CAI41193.1| 231|Homo sapiens nebulette protein.
Length = 231
Score = 29.5 bits (63), Expect = 4.7
Identities = 22/99 (22%), Positives = 43/99 (43%)
Frame = +2
Query: 74 TNCQAVGH*KNISSRIQAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYN 253
T+ + H KNI + I ++KG K+++ N ++ +V E + +L+S
Sbjct: 69 TDSPMLNHVKNIGAFISEAKYKGTIKADLSNSLYKRMPATIDSVFAGE--VTQLQSEVAY 126
Query: 254 KSNMDQLIAIVNFLEKKNINYILNVMPVMQDERKMSKRK 370
K D ++ K + + M V + + +S RK
Sbjct: 127 KQKHDAAKGFSDYAHMKEPPEVKHAMEVNKHQSNISYRK 165
>AL157398-4|CAC19642.1| 1014|Homo sapiens nebulette protein.
Length = 1014
Score = 29.5 bits (63), Expect = 4.7
Identities = 22/99 (22%), Positives = 43/99 (43%)
Frame = +2
Query: 74 TNCQAVGH*KNISSRIQAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYN 253
T+ + H KNI + I ++KG K+++ N ++ +V E + +L+S
Sbjct: 69 TDSPMLNHVKNIGAFISEAKYKGTIKADLSNSLYKRMPATIDSVFAGE--VTQLQSEVAY 126
Query: 254 KSNMDQLIAIVNFLEKKNINYILNVMPVMQDERKMSKRK 370
K D ++ K + + M V + + +S RK
Sbjct: 127 KQKHDAAKGFSDYAHMKEPPEVKHAMEVNKHQSNISYRK 165
>D82880-1|BAA11621.1| 853|Homo sapiens human ras GTPase-activating
protein, Gap1m protein.
Length = 853
Score = 28.7 bits (61), Expect = 8.2
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +2
Query: 173 EQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLI 277
E++ + T V KN + KLE SS+NK NM Q+I
Sbjct: 648 ERKDAIYTIPV-KNILAVEKLEESSFNKKNMFQVI 681
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,172,191
Number of Sequences: 237096
Number of extensions: 1180687
Number of successful extensions: 2250
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 2220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2250
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3144905170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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