Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5m01
(416 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50110-3|CAA90445.2| 459|Caenorhabditis elegans Hypothetical pr... 30 0.78
AC006701-1|AAM97962.1| 327|Caenorhabditis elegans Hypothetical ... 30 0.78
AC025723-10|AAK29940.1| 691|Caenorhabditis elegans Mammalian fe... 29 1.4
AF067214-4|AAC17001.1| 399|Caenorhabditis elegans Dystroglycan ... 28 2.4
Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z37092-3|CAA85454.1| 266|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical pr... 26 9.5
U58754-2|AAB00671.1| 391|Caenorhabditis elegans Hypothetical pr... 26 9.5
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ... 26 9.5
AL031633-6|CAA21014.3| 225|Caenorhabditis elegans Hypothetical ... 26 9.5
>Z50110-3|CAA90445.2| 459|Caenorhabditis elegans Hypothetical
protein F18H3.4 protein.
Length = 459
Score = 29.9 bits (64), Expect = 0.78
Identities = 22/80 (27%), Positives = 40/80 (50%)
Frame = +2
Query: 149 KSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNV 328
K N+ EQ TE A+ +N+KLL L + ++ MDQ + N ++K + + L
Sbjct: 121 KRNLSARDEQALVTEIDALKRNKKLLESLAEITSHRKGMDQELE-KNRIQKHKVYFELT- 178
Query: 329 MPVMQDERKMSKRKKKVINN 388
Q+ K K++++ I +
Sbjct: 179 --SCQNRFKQMKQERRHIED 196
>AC006701-1|AAM97962.1| 327|Caenorhabditis elegans Hypothetical
protein Y104H12D.2 protein.
Length = 327
Score = 29.9 bits (64), Expect = 0.78
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +2
Query: 197 AAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINY 316
AA KNE LL+ L+ SYN++ Q++ I K N NY
Sbjct: 34 AARTKNETLLSLLDKFSYNET--VQMVVIKQIGRKNNCNY 71
>AC025723-10|AAK29940.1| 691|Caenorhabditis elegans Mammalian fe65
homolog protein1, isoform a protein.
Length = 691
Score = 29.1 bits (62), Expect = 1.4
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +2
Query: 188 TETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNI--NYILNVMPVMQDERKMS 361
T + CK +K L S + N+D I V+F +KK I + +V+ DE
Sbjct: 33 TLSLGTCKQQKKKKNLYSDLACRKNVDIFIIYVSFEKKKEIFLEFFHHVLQEEHDEYSAF 92
Query: 362 KRKKKVINNNKYIL 403
K + + +Y++
Sbjct: 93 KEAYEEEESREYVI 106
>AF067214-4|AAC17001.1| 399|Caenorhabditis elegans Dystroglycan
protein 2 protein.
Length = 399
Score = 28.3 bits (60), Expect = 2.4
Identities = 24/102 (23%), Positives = 44/102 (43%)
Frame = +2
Query: 110 SSRIQAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVN 289
++R+ R + + + + S T+ K+E LL+ LE S +QL N
Sbjct: 19 TARVIVSRKQAIDWAAFGDSTTATSPTDRTVDWKSESLLDDLEESRMKNEIGEQLPKTKN 78
Query: 290 FLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFKKK 415
LE +LN + + Q + +K + K+++FK K
Sbjct: 79 ELE-----VVLNALDMEQLKGSKTKLNDDNVAKQKHMIFKCK 115
>Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical
protein F48F5.1 protein.
Length = 1291
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 227 NKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNK 394
N LE+ KSNM +++ N EK + L + RK++++KK N +
Sbjct: 818 NALEAKIKEKSNMRKVVDEQNQREKDELQAKLRADQEKSEARKIAEKKKDEQNQKE 873
>Z37092-3|CAA85454.1| 266|Caenorhabditis elegans Hypothetical
protein F44F4.3 protein.
Length = 266
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +2
Query: 161 VNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLE 298
V + E Q E +++CK E +K+E + ++ M + + F E
Sbjct: 70 VTLEEIQGKRELSSICKMEAYTSKIEDKTKQRNYMATITRQLKFSE 115
>Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical
protein T24B8.7b protein.
Length = 2923
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 239 SSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILF 406
SSS KS + N + + + M + D+ M++ K + NN+KY++F
Sbjct: 128 SSSVEKSKYPLNDLVRNQFVESDEEDVAEEMRTVWDDASMARIKTILENNHKYVIF 183
>Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical
protein T24B8.7a protein.
Length = 2920
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 239 SSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILF 406
SSS KS + N + + + M + D+ M++ K + NN+KY++F
Sbjct: 128 SSSVEKSKYPLNDLVRNQFVESDEEDVAEEMRTVWDDASMARIKTILENNHKYVIF 183
>Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical
protein T24B8.7b protein.
Length = 2923
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 239 SSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILF 406
SSS KS + N + + + M + D+ M++ K + NN+KY++F
Sbjct: 128 SSSVEKSKYPLNDLVRNQFVESDEEDVAEEMRTVWDDASMARIKTILENNHKYVIF 183
>Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical
protein T24B8.7a protein.
Length = 2920
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 239 SSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILF 406
SSS KS + N + + + M + D+ M++ K + NN+KY++F
Sbjct: 128 SSSVEKSKYPLNDLVRNQFVESDEEDVAEEMRTVWDDASMARIKTILENNHKYVIF 183
>U58754-2|AAB00671.1| 391|Caenorhabditis elegans Hypothetical
protein C39H7.4 protein.
Length = 391
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 283 NSN*LVHVGFVVRARFQFIQQLFIFAHGRSFCRRLLLRHVYH 158
N N V FV A Q + AHG S+ + +L ++YH
Sbjct: 239 NENVCYIVSFVAGAFILSSQVVLTTAHGNSYKKEKILANLYH 280
>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
protein Y11D7A.14 protein.
Length = 1464
Score = 26.2 bits (55), Expect = 9.5
Identities = 24/83 (28%), Positives = 34/83 (40%)
Frame = +2
Query: 146 QKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILN 325
+KS V + ++ E EKLL K M+Q I N LE+K
Sbjct: 868 EKSEKVKVQKELEEVEKQG---REKLLEKEREFRKTMEEMEQNEEIFNVLERKYNEQHKK 924
Query: 326 VMPVMQDERKMSKRKKKVINNNK 394
VM M D + +RK + +N K
Sbjct: 925 VMK-MNDVLREYERKIEQLNMEK 946
>AL031633-6|CAA21014.3| 225|Caenorhabditis elegans Hypothetical
protein Y39A1A.8 protein.
Length = 225
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -1
Query: 62 THLTLRTFVGNYC 24
+HLT T+VGNYC
Sbjct: 123 SHLTKTTYVGNYC 135
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,915,340
Number of Sequences: 27780
Number of extensions: 206308
Number of successful extensions: 577
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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