Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5l22
(525 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK172778-1|BAD18759.1| 976|Homo sapiens protein ( Homo sapiens ... 30 4.3
AF288687-1|AAG01173.1| 1086|Homo sapiens CGI-152 protein protein. 30 4.3
AB058728-1|BAB47454.1| 1203|Homo sapiens KIAA1825 protein protein. 30 4.3
U77720-1|AAC51323.1| 1214|Homo sapiens transmembrane protein Jag... 29 7.6
U73936-1|AAC52020.1| 1218|Homo sapiens Jagged 1 protein. 29 7.6
U61276-1|AAB39007.1| 1218|Homo sapiens transmembrane protein Jag... 29 7.6
BC126207-1|AAI26208.1| 1218|Homo sapiens jagged 1 (Alagille synd... 29 7.6
BC126205-1|AAI26206.1| 1218|Homo sapiens jagged 1 (Alagille synd... 29 7.6
BC098393-1|AAH98393.1| 1218|Homo sapiens jagged 1 (Alagille synd... 29 7.6
AL035456-3|CAC07198.1| 1218|Homo sapiens jagged 1 (Alagille synd... 29 7.6
AF028593-1|AAB84053.1| 1218|Homo sapiens transmembrane protein J... 29 7.6
AF003837-1|AAC51731.1| 1218|Homo sapiens Jagged1 protein. 29 7.6
>AK172778-1|BAD18759.1| 976|Homo sapiens protein ( Homo sapiens
cDNA FLJ23939 fis, clone HEP01940, highly similar to
Cation-transporting ATPase 2 (EC 3.6.3.-). ).
Length = 976
Score = 30.3 bits (65), Expect = 4.3
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 6 YLYFSSFVIRTIVAFRPPLVQTPVLNMFDLR 98
Y Y+S F + +VAF LVQ + NM ++R
Sbjct: 34 YWYYSVFTLSMLVAFEASLVQQQMRNMSEIR 64
>AF288687-1|AAG01173.1| 1086|Homo sapiens CGI-152 protein protein.
Length = 1086
Score = 30.3 bits (65), Expect = 4.3
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 6 YLYFSSFVIRTIVAFRPPLVQTPVLNMFDLR 98
Y Y+S F + +VAF LVQ + NM ++R
Sbjct: 144 YWYYSVFTLSMLVAFEASLVQQQMRNMSEIR 174
>AB058728-1|BAB47454.1| 1203|Homo sapiens KIAA1825 protein protein.
Length = 1203
Score = 30.3 bits (65), Expect = 4.3
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 6 YLYFSSFVIRTIVAFRPPLVQTPVLNMFDLR 98
Y Y+S F + +VAF LVQ + NM ++R
Sbjct: 261 YWYYSVFTLSMLVAFEASLVQQQMRNMSEIR 291
>U77720-1|AAC51323.1| 1214|Homo sapiens transmembrane protein Jagged
protein.
Length = 1214
Score = 29.5 bits (63), Expect = 7.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 26 CDTHNSCLSTATCSNSG 76
C TH CL+ TCSN+G
Sbjct: 287 CGTHQPCLNGGTCSNTG 303
>U73936-1|AAC52020.1| 1218|Homo sapiens Jagged 1 protein.
Length = 1218
Score = 29.5 bits (63), Expect = 7.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 26 CDTHNSCLSTATCSNSG 76
C TH CL+ TCSN+G
Sbjct: 300 CGTHQPCLNGGTCSNTG 316
>U61276-1|AAB39007.1| 1218|Homo sapiens transmembrane protein Jagged
1 protein.
Length = 1218
Score = 29.5 bits (63), Expect = 7.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 26 CDTHNSCLSTATCSNSG 76
C TH CL+ TCSN+G
Sbjct: 300 CGTHQPCLNGGTCSNTG 316
>BC126207-1|AAI26208.1| 1218|Homo sapiens jagged 1 (Alagille
syndrome) protein.
Length = 1218
Score = 29.5 bits (63), Expect = 7.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 26 CDTHNSCLSTATCSNSG 76
C TH CL+ TCSN+G
Sbjct: 300 CGTHQPCLNGGTCSNTG 316
>BC126205-1|AAI26206.1| 1218|Homo sapiens jagged 1 (Alagille
syndrome) protein.
Length = 1218
Score = 29.5 bits (63), Expect = 7.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 26 CDTHNSCLSTATCSNSG 76
C TH CL+ TCSN+G
Sbjct: 300 CGTHQPCLNGGTCSNTG 316
>BC098393-1|AAH98393.1| 1218|Homo sapiens jagged 1 (Alagille
syndrome) protein.
Length = 1218
Score = 29.5 bits (63), Expect = 7.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 26 CDTHNSCLSTATCSNSG 76
C TH CL+ TCSN+G
Sbjct: 300 CGTHQPCLNGGTCSNTG 316
>AL035456-3|CAC07198.1| 1218|Homo sapiens jagged 1 (Alagille
syndrome) protein.
Length = 1218
Score = 29.5 bits (63), Expect = 7.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 26 CDTHNSCLSTATCSNSG 76
C TH CL+ TCSN+G
Sbjct: 300 CGTHQPCLNGGTCSNTG 316
>AF028593-1|AAB84053.1| 1218|Homo sapiens transmembrane protein
Jagged 1 protein.
Length = 1218
Score = 29.5 bits (63), Expect = 7.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 26 CDTHNSCLSTATCSNSG 76
C TH CL+ TCSN+G
Sbjct: 300 CGTHQPCLNGGTCSNTG 316
>AF003837-1|AAC51731.1| 1218|Homo sapiens Jagged1 protein.
Length = 1218
Score = 29.5 bits (63), Expect = 7.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 26 CDTHNSCLSTATCSNSG 76
C TH CL+ TCSN+G
Sbjct: 300 CGTHQPCLNGGTCSNTG 316
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,417,891
Number of Sequences: 237096
Number of extensions: 1383506
Number of successful extensions: 1909
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1909
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5046825278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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