Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5l18
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    27   2.0  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    26   6.2  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   6.2  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    25   8.2  

>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1260

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
 Frame = +3

Query: 402  WNRCLEHNYTREI--VRLMTTLPVPSNRNTLSHSCTERHAQLFLPPAATISVEGGDACAP 575
            WN  +   Y+  I  +R +    +P N   L           FL P+ T +V GG+    
Sbjct: 1016 WNAPIAITYSSVIYCLRSIINQDIPLNEGCLKPIEIRIPPSCFLNPSETAAVVGGNVLTS 1075

Query: 576  EYPGTASCKSAGVCSSAGQQMDSVT 650
            +       K+  +C+++   M+++T
Sbjct: 1076 QRITDVILKAFSICAASQGCMNNLT 1100


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 535 QQRFPSKGVTHVHLSTLEQRHANRRVFVAVL 627
           QQ F S     +H+  LE+ HA+  +F+ +L
Sbjct: 690 QQFFRSDNSGTMHMEQLERYHASANIFIQML 720


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 585 GTASCKSAGVCSSAGQQMDSVTN 653
           G  SC S GVC+SA +Q   +TN
Sbjct: 411 GMGSCAS-GVCTSASRQCKKLTN 432


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 371 TPQDVSWHSSVEPLFRT*LYS*DREINDHFTGTV*SQY 484
           +P ++S HS+ +PL  T + S   +  D F+G+  S +
Sbjct: 80  SPPELSVHSAQQPLIPTSIASSSAQTGDTFSGSSQSNF 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,894,601
Number of Sequences: 5004
Number of extensions: 56690
Number of successful extensions: 145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)