Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5l18
(721 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0295 + 2217496-2218092,2218774-2218876,2219140-2219249,221... 33 0.30
03_01_0458 - 3521938-3522024,3522133-3522213,3522673-3522806,352... 31 1.2
02_01_0405 - 2952434-2955583 31 1.2
10_08_0631 - 19435796-19436452,19437237-19438130 30 2.1
02_02_0028 + 6196453-6196512,6196936-6197320,6197843-6197925,619... 30 2.1
02_01_0406 - 2958933-2962076 29 3.7
03_05_1070 + 30125131-30127029 29 4.9
02_01_0243 - 1601977-1602834,1602857-1603063 28 6.5
01_01_0453 - 3361460-3361549,3361660-3361846,3362038-3362139,336... 28 6.5
11_01_0098 - 724413-724449,725200-725690 28 8.6
08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692 28 8.6
03_06_0460 - 34098115-34098622,34098981-34099355,34100939-341011... 28 8.6
>11_01_0295 +
2217496-2218092,2218774-2218876,2219140-2219249,
2219328-2219399,2219653-2219814,2220300-2220510,
2220613-2220948,2221050-2221162
Length = 567
Score = 32.7 bits (71), Expect = 0.30
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 610 PADLHDAVPGYSGAHASPPSTEIVAAGGKNNCAWRSVQE 494
PADL D + G G+H P ST+ G + A + +E
Sbjct: 121 PADLKDLIAGLYGSHPQPSSTDAAEVGTQEGSAVAAAEE 159
>03_01_0458 - 3521938-3522024,3522133-3522213,3522673-3522806,
3523189-3523270,3523420-3523692,3523953-3524162,
3524252-3524337,3525197-3525289,3526003-3526227,
3526320-3526930,3529328-3529395,3529491-3529679,
3529773-3529901,3530013-3532484
Length = 1579
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Frame = -1
Query: 643 LSIC*PALLQTPADLHDAVP---GYSGAHASPPS-TEIVAAGGKNNCAWRSVQECDSVLR 476
L C LLQT H+ V GY G S +++ K N W++V+ + L+
Sbjct: 1062 LRSCDSDLLQTKEKNHNEVHNGLGYPGTRPIASSDVDLIKPTVKVNGVWKNVEYTKATLK 1121
Query: 475 LDGTGKVVINLTISRV*LCSKQR 407
+G GK N + + K R
Sbjct: 1122 ANGVGKNAENTKVPTIPSTQKSR 1144
>02_01_0405 - 2952434-2955583
Length = 1049
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/80 (30%), Positives = 35/80 (43%)
Frame = +3
Query: 411 CLEHNYTREIVRLMTTLPVPSNRNTLSHSCTERHAQLFLPPAATISVEGGDACAPEYPGT 590
C +H+ I L L + N +L+ SCTE+ L +S +GG A A GT
Sbjct: 8 CKKHSNKFPIPVLALALVLLINLASLTSSCTEQDRSSLLRFLRELSQDGGLA-ASWQDGT 66
Query: 591 ASCKSAGVCSSAGQQMDSVT 650
CK G+ S + V+
Sbjct: 67 DCCKWDGITCSQDSTVTDVS 86
>10_08_0631 - 19435796-19436452,19437237-19438130
Length = 516
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = -3
Query: 719 QIRQKAPPLSKFR*HLQCSNNPVRHAVHLLTSTATNTRRFA*RCSRVLRC 570
+I+ A PLSK R HL CSN P + + T T N R +V++C
Sbjct: 467 EIQVSASPLSK-RWHLVCSNIPNNISYLVSTFTLANCRTTDIGTKKVMQC 515
>02_02_0028 +
6196453-6196512,6196936-6197320,6197843-6197925,
6198060-6198183,6198404-6198523,6198595-6198755,
6198999-6199157,6199272-6199434,6199604-6199729,
6199775-6199900,6200400-6200764,6201204-6201404,
6201685-6201794,6201919-6202003,6202553-6202681,
6202763-6202868,6202984-6203072,6203172-6203474
Length = 964
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +3
Query: 519 LFLPPAATISVEGGD--ACAPEYPGTASCKSAGVCSSA 626
L +PP +V GD + A + P ASC++AG C++A
Sbjct: 99 LQIPPPERRAVGDGDLLSSAGDLPDAASCRAAGSCAAA 136
>02_01_0406 - 2958933-2962076
Length = 1047
Score = 29.1 bits (62), Expect = 3.7
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +3
Query: 417 EHNYTREIVRLMTTLPVPSNRNTLSHSCTERHAQLFLPPAATISVEGGDACAPEYPGTAS 596
+H+ I L L + N +L+ SCTE+ L +S +GG A GT
Sbjct: 8 KHSNKFPIPVLALALVLLINLASLTSSCTEQDRSSLLKFIRELSQDGG-LSASWQDGTDC 66
Query: 597 CKSAGV-CSSAGQQMD 641
CK G+ CS G D
Sbjct: 67 CKWDGIACSQDGTVTD 82
>03_05_1070 + 30125131-30127029
Length = 632
Score = 28.7 bits (61), Expect = 4.9
Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -1
Query: 616 QTPADLHDAVPGYSGAHASPPSTEIVAAGGKNNCAWRSVQECDS-VLRLD 470
QT LH A A+ S + A GG+ AWRS DS VLRLD
Sbjct: 497 QTRLHLHRYQQPRPAAMAARHSAD--AGGGRGEAAWRSTATQDSQVLRLD 544
>02_01_0243 - 1601977-1602834,1602857-1603063
Length = 354
Score = 28.3 bits (60), Expect = 6.5
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Frame = +3
Query: 495 SCTERHAQLFLPPA-ATISVEG---GDACAPEY--PGTASCKSAGVCSSAGQQMDSVTNR 656
S + ++ +F P A AT V G G CA P TASC S+G ++A S R
Sbjct: 59 SSSSPYSYVFTPSATATTRVAGYCCGATCASASAAPATASCCSSGTRAAAATAACSSATR 118
Query: 657 IIGALQVLSKL*QWRRL 707
G+ + + W+RL
Sbjct: 119 RRGSWSICRR---WKRL 132
>01_01_0453 -
3361460-3361549,3361660-3361846,3362038-3362139,
3362239-3362306,3362976-3363175,3363253-3363595,
3363837-3363893,3364011-3364727,3364805-3365007,
3365171-3365297
Length = 697
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 414 LEHNYTREIVRLMTTLPVPSNRNTLS 491
L+H TR+++ L PV +N+N LS
Sbjct: 147 LDHRQTRDLISLFLPAPVRANQNKLS 172
>11_01_0098 - 724413-724449,725200-725690
Length = 175
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 570 APEYP-GTASCKSAGVCSSAGQQMDSVTNRIIGALQV 677
APE P A C AGV +SAG S + R+ G +
Sbjct: 130 APELPLPPACCMEAGVSTSAGASTTSPSRRMAGCRMI 166
>08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692
Length = 455
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 305 DLGVCCNYHRRDRVVCRKSKTP 370
DL C +YHRR +V SKTP
Sbjct: 126 DLSKCRDYHRRHKVCEAHSKTP 147
>03_06_0460 -
34098115-34098622,34098981-34099355,34100939-34101156,
34101235-34101297
Length = 387
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/57 (22%), Positives = 25/57 (43%)
Frame = +3
Query: 507 RHAQLFLPPAATISVEGGDACAPEYPGTASCKSAGVCSSAGQQMDSVTNRIIGALQV 677
+ A++F A+ G C + + +A C S ++M V ++GA +V
Sbjct: 257 KSARVFFVTASPSHAGAGGECYDQTTPVGAADAASYCGSTSRRMVQVAGEVLGASRV 313
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,354,285
Number of Sequences: 37544
Number of extensions: 393546
Number of successful extensions: 1107
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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