Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5l08
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    29   0.85 
SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces p...    29   0.85 
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    27   2.6  
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy...    27   3.4  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    26   4.5  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    26   6.0  
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    25   7.9  
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc...    23   8.0  

>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1418

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +1

Query: 49   QKRNMNTSVDAVTKLIRLQ-NDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEML 225
            +K  M    D  T   RL+ +  +    +++ Y NSD  DYT+   ++PG  F    E +
Sbjct: 1124 EKDAMLEKTDETTSNRRLRAHHKIHYGEDLNIYDNSDDTDYTVNDRSSPGSPFPIETETI 1183

Query: 226  T 228
            +
Sbjct: 1184 S 1184


>SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 314

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +1

Query: 73  VDAVTKLIRLQNDVLDMMREVDQYL 147
           +D  + +IRL ND++  +RE++QYL
Sbjct: 254 LDETSSVIRLSNDLVLFLREMNQYL 278


>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 70  SVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIES 180
           S+D   +L  L NDVL     V++ LNS  PD  +++
Sbjct: 391 SMDTTVRLWNLDNDVLHKDNPVEESLNS-PPDQPVDN 426


>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 764

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/46 (26%), Positives = 28/46 (60%)
 Frame = +1

Query: 25  VQLLQFSFQKRNMNTSVDAVTKLIRLQNDVLDMMREVDQYLNSDTP 162
           + +L++SF + +++ SV A    + L+++VLD+ +   + +  D P
Sbjct: 567 ITILRWSFPRDDVHDSVQAQQIALGLRDEVLDLEKAGIKVIQCDEP 612


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +2

Query: 581 FKEC---RSHLQCLLR*CFDALHNFCVAHTTALAPTRTFRA 694
           FK C   R+H    L   +  L++ CV ++T +A T+TF A
Sbjct: 130 FKNCVGFRNHKFFFLECFYLNLYSICVLYSTFVAITKTFTA 170


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1316

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -3

Query: 138  VHFAHHVQHVVLQTNELCHRVHGRVHVSFLKTKLQQLY 25
            V+  HHVQ  +   NE+      +V ++ ++ K+Q L+
Sbjct: 934  VYAHHHVQLRIGLDNEISQNNEAKVFLNIIRAKVQNLH 971


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 489 QIFSKSLLQVLLCSRLIIFLSYNAIIINSLFLKNV 593
           +IF   ++ VL CSRL+  +S + ++  S ++  V
Sbjct: 406 EIFLNGVVSVLACSRLVFAVSRDGVLPFSNWISQV 440


>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
           Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 329

 Score = 23.0 bits (47), Expect(2) = 8.0
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +3

Query: 507 LLQVLLCSRLIIFLSYNAIIINSLFLKNVVVICNVY*GNVSMRCIIF 647
           +L +++C  L +++    +I+N   + +   I  V    VS  CI F
Sbjct: 169 ILWLIICCILFVYIKSGDLILNKALICSTCTISAVLLLIVSSVCIPF 215



 Score = 20.6 bits (41), Expect(2) = 8.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 318 SLYKFNYXKTLCTIIWVFILQHLCI 392
           S+  FN  + +  IIW+  L   CI
Sbjct: 153 SIGLFNIRREMMIIIWILWLIICCI 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,563,838
Number of Sequences: 5004
Number of extensions: 47912
Number of successful extensions: 174
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)