Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5l07
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    29   0.83 
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    29   0.83 
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    28   1.1  
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    27   1.9  
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha...    27   2.5  
SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc...    27   3.4  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    26   4.4  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    26   4.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   4.4  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    26   5.9  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   5.9  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    25   7.8  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    25   7.8  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   7.8  

>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1250

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 21/98 (21%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
 Frame = -2

Query: 670  YLDS*SLEALSKGLFRSPLTPRRSPFRRLSTGNITMLLMFCIRVFISADSSFVTTANLKK 491
            Y DS ++  ++   +++ +  R +   + S  N+  L  FCI   ++  ++ +    L+ 
Sbjct: 934  YSDSDAVTIVNNQSYQAVVLQRVNSLPKASFMNVEKLYTFCINTDVTQSNAQLIAIQLQG 993

Query: 490  AAPIS---GSESLLRAFPASRSSVRERYISLSTWAFPE 386
            A+P S   G ++ L     S+ ++ + + S+  +AFP+
Sbjct: 994  ASPFSLVIGIKNELTG-SVSKYTLNDIHESVYKFAFPQ 1030


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 5/132 (3%)
 Frame = +3

Query: 306 INALEETLDYDRDGLTKLKKAIKAIHNSGNAHV--DNEMYLSRTLERLAGNALSKDSEP- 476
           INA     D D +   ++K    A+ N   + +  +NE  +   L++LA   LSKD +P 
Sbjct: 342 INAKLNEDDIDSELEIEVKPKTTALDNIEKSKLSEENEHGIKGKLKQLAEIKLSKDGKPF 401

Query: 477 --DIGAAFFKFAVVTKELSALMKTLMQNINNIVMFPVDSLLKGDLRGVKGDLKRPFDKAS 650
             +     F   +V +  +A+M  L +N     +     + K  ++G K + + P ++A 
Sbjct: 402 ENEFNIKSFNRNLVKR--AAVMAKLQRNQLEEEL-KAKGIYKPTIQGEKEEEEDPLERAR 458

Query: 651 KDYESKYLKIEK 686
            D E K  ++EK
Sbjct: 459 NDAE-KIRQLEK 469


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 1/114 (0%)
 Frame = +2

Query: 260 DYIYVRVTNSTMS-SNNQRSRRDTGLRPRWPNETEEGDKSHTQFRKCPRGQRDVSFTNTG 436
           ++ +  ++N   S S N  SRR+   R R    +   +K  T + +     R +  +N  
Sbjct: 153 NFTHTPISNRKSSRSRNDGSRRNGNGRRRGNYSSHGSNKRQTNYSREKDASRSIDSSNPS 212

Query: 437 AARWERS*QRFRARYWSSLLQVRCRHKGTIGTYEDSDAKH*QHSDVSGR*PSKR 598
           A   +     F ++  SS        K    T EDS ++   HS  SG  PS++
Sbjct: 213 AEYRDDINNTFGSQTVSS-----ANGKEVPQTSEDSSSQAPHHSSSSGHAPSQQ 261


>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 330 DYDRDGLTKLKKAIKAIHNSGNAHVDN-EMYLSRTLERLAGNALSK 464
           DY +  LT   ++++  HN+G AH+ N + Y ++  +  A   L +
Sbjct: 7   DYCQVWLTHDSQSVRKAHNAGRAHIQNVQDYYTKVAQEEAQKQLEE 52


>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = +3

Query: 354 KLKKAIKAIHNSGNAHVDNEMYLSRTLERLAGNALSKDSEPD 479
           K+K A KA H S   HVDN     +  E   G   S D E D
Sbjct: 26  KVKDAEKAEHISLQGHVDNSDEEGQDKEFFPGFGSSDDDEED 67


>SPCC1442.08c |cox12||cytochrome c oxidase subunit
           VIb|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 83

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 245 LSSFLNEFTNTNKTRHCY 192
           +S  L  F NTN+T+HC+
Sbjct: 14  ISYLLYRFPNTNQTKHCF 31


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
            Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +3

Query: 219  GEFIEETREDYSSPTTSTFVSRIPQCR--QTINALEETLDYDRDGLTKLKKAI 371
            G  +E+  EDY +       +++   R  Q + ALEETL    +  TK +K I
Sbjct: 934  GVSVEQAAEDYLNAKEKHDQAKVLVARLTQLLQALEETLRRRNEMWTKFRKLI 986


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +3

Query: 495 FKFAVVTKELSALMKTLMQNINNIVMFPVDSLLKGDLR 608
           F F ++ KE   L  +  +NI +I +F +DSLL  DLR
Sbjct: 555 FPFRLI-KEFLNLRLSCAENITSISLFTIDSLL-DDLR 590


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = +3

Query: 504  AVVTKELSALMKTLMQNINNIVMFPVDSLLKGDLRGVKGDLKRPFDKASKDYESKYLKIE 683
            +VV   L ++  T  +N   I  FPV + L+ ++ G+   L   FD +   Y++ + K+E
Sbjct: 1000 SVVNIPLLSIKTTAQRNCTLIGFFPVINRLESEILGIFESLLFHFD-SILGYQNYWKKVE 1058


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/63 (26%), Positives = 25/63 (39%)
 Frame = +2

Query: 284 NSTMSSNNQRSRRDTGLRPRWPNETEEGDKSHTQFRKCPRGQRDVSFTNTGAARWERS*Q 463
           +ST S+ + RS R            +    SH  + K    Q   ++ N+G  R E    
Sbjct: 280 SSTPSNTSSRSNRQNHGNFSEKRHYDRYGNSHPSYNKYSHYQHGFNYNNSGNNRNESGHP 339

Query: 464 RFR 472
           RFR
Sbjct: 340 RFR 342


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 243 EDYSSPTTSTFVSRIPQCRQTI 308
           + Y S +TST +++ P CR  I
Sbjct: 637 QKYGSSSTSTIIAKCPMCRGNI 658


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 98  GC*IFLLTLTSGLILPSKRLLIGLWWQNSDISNNAGSYW 214
           GC IF+  L  G I+ S +  +G+    S    N G  W
Sbjct: 120 GCIIFIAALPDGQIIVSSKHSLGIVEGQSVSHANVGERW 158


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 104 NNRIVTNKHANKNNNRKSSESHDTPILYNVE 12
           N R    +++N N +  S  ++D P+L+NV+
Sbjct: 236 NYRSSIQENSNGNRDSISPSAYDAPLLHNVD 266


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 113 ERFNNRIVTNKHANKNNNRK-SSESHDTPILYN 18
           E FN +IV++ + N NNN K  S   D+   YN
Sbjct: 549 ETFNEQIVSHFNLNDNNNNKVLSIPRDSLQFYN 581


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,736,016
Number of Sequences: 5004
Number of extensions: 54515
Number of successful extensions: 228
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)