Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5l07
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0156 - 5981080-5982189,5982227-5982247,5983308-5983337 35 0.053
02_01_0410 + 2996779-2997888 34 0.12
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751... 33 0.21
10_08_0656 + 19628903-19629155,19629255-19629463,19631084-196311... 32 0.49
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 31 0.86
12_02_0844 - 23609783-23609926,23610014-23610331,23610771-236109... 30 1.5
07_03_0590 + 19786960-19787136,19787198-19787272,19787676-197881... 29 2.6
02_02_0127 - 7038149-7038292,7038380-7038697,7038781-7038879,703... 29 2.6
12_02_0634 + 21416205-21416954 29 3.5
11_01_0299 - 2241760-2241990,2242958-2243331,2243427-2243754 28 8.0
01_01_0220 + 1866989-1868393,1868465-1869153 28 8.0
>03_02_0156 - 5981080-5982189,5982227-5982247,5983308-5983337
Length = 386
Score = 35.1 bits (77), Expect = 0.053
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +3
Query: 480 IGAAFFKFAVVTKELSALMKTLMQNINNIVMFPVDSLLKGDLRGVKGDLKRPFDKASKD 656
I + K V+T L+ L N+ +++FP++ LL G+L +KGD + + S D
Sbjct: 213 IDFVYIKHVVMTIGLNTWGLVLYNNLEALMLFPLEMLLMGELNQMKGDSAKVTNWLSSD 271
>02_01_0410 + 2996779-2997888
Length = 369
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +3
Query: 480 IGAAFFKFAVVTKELSALMKTLMQNINNIVMFPVDSLLKGDLRGVKGDLKRPFDKASKD 656
I + K V+T L+ L N+ ++FP++ LL G+L +KGD + + S D
Sbjct: 196 IDFVYIKHVVMTIGLNTWGLVLYNNLEAFMLFPLEMLLTGELNQMKGDNAKVTNWLSSD 254
>12_02_1035 -
25570009-25571241,25571940-25573709,25573797-25575118,
25575208-25575555,25576540-25576633
Length = 1588
Score = 33.1 bits (72), Expect = 0.21
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +3
Query: 306 INALEETLDYDRDGLTKLKKAIKAIHNSGNAHVDNEMYLSRTLERLA 446
+ +L+ RDG +LK+ IK +VDN M L RTLER A
Sbjct: 432 VESLQALAQEVRDGNVELKETIKHHEGVKALYVDNLMQLERTLERNA 478
>10_08_0656 +
19628903-19629155,19629255-19629463,19631084-19631182,
19631261-19631334,19631822-19631896,19631979-19632012
Length = 247
Score = 31.9 bits (69), Expect = 0.49
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 306 INALEETLDY-DRDGLTKLKKAIKAIHNSGNAHVDNEMYLSRTLERLAGNALSKDS 470
+++ E +D+ + +GL K+ +K N ++Y+ + +ER G+ L+K S
Sbjct: 180 VDSSENLMDFKEHEGLDKIGDLVKDTQRDDNVRCSCDLYVLKYIERFNGSGLAKKS 235
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 31.1 bits (67), Expect = 0.86
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 3/106 (2%)
Frame = +2
Query: 311 RSRRDTGLRPRWPNETEEGDKSHTQFRKCPRGQRDVSFTNTGAARWERS*QRFRARYWSS 490
R R G+ R+P++ D+S ++ PR R + N + + R R ++
Sbjct: 256 RHERSPGILGRFPHDRLRHDRSPSRLEPSPR-DRGRHYDNRDRSPYISPRHRMRPSHYRD 314
Query: 491 LLQVRCR---HKGTIGTYEDSDAKH*QHSDVSGR*PSKRRSAWCQR 619
R H+ + DS + QH D R PS+R + +R
Sbjct: 315 NTPSRGEMHHHRDNTPSRVDSSPRRSQHEDFRDRSPSRRDKSPSER 360
>12_02_0844 -
23609783-23609926,23610014-23610331,23610771-23610926,
23611068-23611318,23611384-23611530,23612450-23612501,
23612628-23612763,23613507-23613538
Length = 411
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 223 SPIPIRPGIVTDITILPPESN*QPF*RQ 140
S P RP +V IT PP S +P+ RQ
Sbjct: 11 SRCPARPSVVVQITFAPPRSRGRPYSRQ 38
>07_03_0590 +
19786960-19787136,19787198-19787272,19787676-19788173,
19788605-19788970,19788995-19789009
Length = 376
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 456 ERSQRAAPVFVKDTSRCPRGHFRNC 382
++ P+FVKD+ RC +F+NC
Sbjct: 92 DKHDELEPIFVKDSPRCFLRYFKNC 116
>02_02_0127 -
7038149-7038292,7038380-7038697,7038781-7038879,
7038958-7039050,7039138-7039341,7039435-7039525,
7039593-7039695,7039761-7039907,7040825-7040876,
7041003-7041138,7041846-7041911,7041981-7042045
Length = 505
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 229 MNSPIPIRPGIVTDITILPPESN*QPF*RQ 140
+ S P RP +V IT PP S +P+ RQ
Sbjct: 42 LKSRCPARPSVVVQITFAPPPSLGRPYSRQ 71
>12_02_0634 + 21416205-21416954
Length = 249
Score = 29.1 bits (62), Expect = 3.5
Identities = 24/75 (32%), Positives = 33/75 (44%)
Frame = +2
Query: 380 TQFRKCPRGQRDVSFTNTGAARWERS*QRFRARYWSSLLQVRCRHKGTIGTYEDSDAKH* 559
T FR+C G+ +V AA W R R+W +R R +G DA
Sbjct: 84 TVFRRCS-GEEEV-IPGMRAASWSRG------RWWRRRPALRGRGRGGRRRRSGGDATGR 135
Query: 560 QHSDVSGR*PSKRRS 604
+ VSG P+KRR+
Sbjct: 136 RRGRVSGAFPAKRRA 150
>11_01_0299 - 2241760-2241990,2242958-2243331,2243427-2243754
Length = 310
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 226 SLRKLERITVHRLHLRSCHEFHNVVKQS 309
+L KL++I +H + +CH+ +NVV+ S
Sbjct: 266 TLDKLQQIALHHMKDIACHQANNVVQPS 293
>01_01_0220 + 1866989-1868393,1868465-1869153
Length = 697
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +3
Query: 441 LAGNALSKDSEPDIGAAF--FKFAVVTKELSALMKTLMQNINNIVMFPVDS-LLKGDLRG 611
LAGN+LS P IGA + ++ + LS ++ + ++ ++ +DS L G + G
Sbjct: 136 LAGNSLSGPIPPSIGALYRLYRLDLSFNNLSGVVPPELNRLDRLLTLRLDSNRLSGGIDG 195
Query: 612 V 614
+
Sbjct: 196 I 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,900,504
Number of Sequences: 37544
Number of extensions: 331187
Number of successful extensions: 913
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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