Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5l07
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67734-3|CAA91529.2| 1050|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z81095-3|CAB03159.2|  494|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z83109-4|CAB05519.1|  705|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U23169-6|AAC46695.1|  393|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AF099925-15|AAC69510.2|  585|Caenorhabditis elegans Calcium bind...    27   9.5  
AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium bind...    27   9.5  

>Z67734-3|CAA91529.2| 1050|Caenorhabditis elegans Hypothetical
           protein B0198.3 protein.
          Length = 1050

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 23/95 (24%), Positives = 41/95 (43%)
 Frame = -2

Query: 682 SIFKYLDS*SLEALSKGLFRSPLTPRRSPFRRLSTGNITMLLMFCIRVFISADSSFVTTA 503
           ++F+Y D+          FR P+ P  +P   ++T  +      C  + IS D S  T A
Sbjct: 692 ALFEYFDNVPAYPCQNFKFRQPVKPEGNPHWMMTT-VVDSARSHCYSLKISKDYSEQTMA 750

Query: 502 NLKKAAPISGSESLLRAFPASRSSVRERYISLSTW 398
            ++K          L++ PA ++ VR   + +  W
Sbjct: 751 AMRKEL------EFLQSLPAHQNCVRFDGVLIGKW 779


>Z81095-3|CAB03159.2|  494|Caenorhabditis elegans Hypothetical
           protein F59F4.3 protein.
          Length = 494

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 251 QFTDYIYVRVTNSTMSSNNQRSRRDTGLRPRWPNETEEGDKSHTQFRK 394
           +F D I    +NS  S+N +RS     LRP + N  +  DKS    R+
Sbjct: 283 RFYDRIKFNRSNSNTSTNTRRSDEMEVLRPDYSNRYDIHDKSKRDARE 330


>Z83109-4|CAB05519.1|  705|Caenorhabditis elegans Hypothetical
           protein F44G3.7 protein.
          Length = 705

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
 Frame = +3

Query: 426 RTLERLAGNALSKDSEPDIGAAFFKFAVVTKELSALMKTLMQNINNI-VMFPVDSLLKGD 602
           RT++ LA N L +  +    ++F K+ + T ELS  +K  ++N++      P D   K  
Sbjct: 557 RTIDVLAPNRLHQCIDDSSASSFGKYQLKTFELSQDVKVKLRNVDKAEEKKPKDKKQKEA 616

Query: 603 LRGVKGDLKRPFDKASKDYESKYLK 677
            +  + D KR +      Y   +LK
Sbjct: 617 EKQFREDFKRKWGPL-MTYHEDHLK 640


>U23169-6|AAC46695.1|  393|Caenorhabditis elegans Hypothetical
           protein C29H12.2 protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +3

Query: 480 IGAAFFKFA--VVTKELSALMKTLMQNINNIVMFPV 581
           +  AFF FA   VTKELSA  + ++ ++  +V++ V
Sbjct: 280 VSIAFFNFAGVSVTKELSATTRMVLDSVRTLVIWVV 315


>AF099925-15|AAC69510.2|  585|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform a protein.
          Length = 585

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -2

Query: 142 QN*TTSQCQEKDLTTALSLTNTQIKTIIAKAPNLTIHPFSTTLNEIT 2
           +N  + Q QEK   +   +T T   T +   P  TI P +T   E+T
Sbjct: 466 RNHVSQQRQEKPPPSTTPITTTTEDTPLITTPETTITPTTTVPEEVT 512


>AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform d protein.
          Length = 679

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -2

Query: 142 QN*TTSQCQEKDLTTALSLTNTQIKTIIAKAPNLTIHPFSTTLNEIT 2
           +N  + Q QEK   +   +T T   T +   P  TI P +T   E+T
Sbjct: 466 RNHVSQQRQEKPPPSTTPITTTTEDTPLITTPETTITPTTTVPEEVT 512


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,909,816
Number of Sequences: 27780
Number of extensions: 300860
Number of successful extensions: 918
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)