Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5l07
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    25   0.89 
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    24   1.6  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    24   1.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.8  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   4.8  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   6.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   6.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   6.3  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   6.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   6.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   8.3  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   8.3  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 127 SQCQEKDLTTALSLTNTQIK 68
           S C+  +L  +LSLT TQ+K
Sbjct: 34  SVCERLNLALSLSLTETQVK 53


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 104 NNRIVTNKHA-NKNNNRKSSESHDTPILYNV 15
           NN I  N +  N NNN  ++ +++  + YN+
Sbjct: 86  NNTIHNNNYKYNYNNNNYNNNNYNKKLYYNI 116


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 104 NNRIVTNKHA-NKNNNRKSSESHDTPILYNV 15
           NN I  N +  N NNN  ++ +++  + YN+
Sbjct: 86  NNTIHNNNYKYNYNNNNYNNNNYNKKLYYNI 116


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +2

Query: 248 LQFTDYIYVRVTNSTMSSNNQRSRRDTGLR-PRWPNETEEGDKSH 379
           LQ T   Y+      +  +N  S    G   P W ++T +G +SH
Sbjct: 190 LQITQSQYLLQQGLGLQGHNPSSGLQPGEGLPMWKSDTSDGPESH 234


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -2

Query: 535  ISADSSFV---TTANLKKAAPISGSESLLRAFPASRSSVR 425
            I A S F+   T++     +P+S  +SL R   +SRSS+R
Sbjct: 1811 IRAVSDFIYHGTSSTSSDISPMSEQKSLPRRGRSSRSSLR 1850


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -2

Query: 535  ISADSSFV---TTANLKKAAPISGSESLLRAFPASRSSVR 425
            I A S F+   T++     +P+S  +SL R   +SRSS+R
Sbjct: 1807 IRAVSDFIYHGTSSTSSDISPMSEQKSLPRRGRSSRSSLR 1846


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 297 RQTINALEETLDYD-RDGLTKLKKAIKAIHN 386
           R T+N + ETLD D ++ L +  K +  ++N
Sbjct: 179 RDTMNKIAETLDEDTKNKLIEESKTVFILNN 209


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 104 NNRIVTNKHANKNNNRKSSES 42
           NN+   N++ANK N  + +++
Sbjct: 443 NNQNADNQNANKQNGNRQNDN 463


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 86  NKHANKNNNRKSSESH 39
           N++ N+NNN  +S  H
Sbjct: 113 NQYKNQNNNHYTSHQH 128


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 487 APISGSESLLRAFP-ASRSSVRERYIS 410
           A ++ +  + R F  ASR++VR RYIS
Sbjct: 597 ALLTKTNRIARIFDSASRTAVRPRYIS 623


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 125 TSGLILPSKRLLIGLWWQNSDISN 196
           T G + P  +  +  WW N  ISN
Sbjct: 351 TRGFLQPVCQNEMNKWWWNMKISN 374


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 487 APISGSESLLRAFP-ASRSSVRERYIS 410
           A ++ +  + R F  ASR++VR RYIS
Sbjct: 687 ALLTKTNRIARIFDSASRTAVRPRYIS 713


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +1

Query: 97  RLLNLSLDID*WFNFAFKTAVNW 165
           R  N  LD+D W N  F   + +
Sbjct: 66  RTKNYPLDVDQWHNKTFLAVIRY 88


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 348 LTKLKKAIKAIHNSGNAHVDNEMYLSR 428
           LTK K+ IK++      H  ++  LSR
Sbjct: 90  LTKAKRFIKSLEERERKHAVHKEQLSR 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,993
Number of Sequences: 438
Number of extensions: 3776
Number of successful extensions: 18
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)