Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5l06
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46787-14|CAA86751.1| 1186|Caenorhabditis elegans Hypothetical p...   235   3e-62
Z36238-11|CAA85280.1| 1186|Caenorhabditis elegans Hypothetical p...   235   3e-62
Z73912-2|CAA98144.4|  859|Caenorhabditis elegans Hypothetical pr...    52   4e-07
Z73912-3|CAE18063.1|  828|Caenorhabditis elegans Hypothetical pr...    50   2e-06
AB096633-1|BAC76733.1|  828|Caenorhabditis elegans leucyl-tRNA s...    50   2e-06
AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical ...    40   0.001
Z81038-5|CAB02766.3|  970|Caenorhabditis elegans Hypothetical pr...    36   0.020
U53155-2|AAC48266.2|  918|Caenorhabditis elegans Valyl trna synt...    36   0.020
AB096631-1|BAC76731.1|  972|Caenorhabditis elegans isoleucyl-tRN...    36   0.020
Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical pr...    36   0.035
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U29612-7|AAO61437.1|  205|Caenorhabditis elegans Heat shock prot...    28   6.9  
U29612-6|AAA68804.1|  219|Caenorhabditis elegans Heat shock prot...    28   6.9  

>Z46787-14|CAA86751.1| 1186|Caenorhabditis elegans Hypothetical
           protein R74.1 protein.
          Length = 1186

 Score =  235 bits (574), Expect = 3e-62
 Identities = 113/190 (59%), Positives = 133/190 (70%), Gaps = 4/190 (2%)
 Frame = +1

Query: 115 KVEYLQEIEKKVQERWESQKIFEVEAPDDGKSHEKFLCTFPYPYMNGRLHLGHTFSLSKC 294
           KV  LQEIEK +QE WES+K FE +A DDGK   K+L TFP+PYMNGRLHLGHTFS SKC
Sbjct: 10  KVAQLQEIEKSIQELWESKKAFEADARDDGKP--KYLVTFPFPYMNGRLHLGHTFSASKC 67

Query: 295 EFACRYYRLKGRMVLFPFGFHCTGMPIKACADKLKREMAVYGCPPVFPEDEELIVKDE-- 468
           EFA  + RL+G+ VLFPFGFHCTGMPIKACADKLKREM  +G PP FPED    VK+E  
Sbjct: 68  EFAAGFQRLQGKEVLFPFGFHCTGMPIKACADKLKREMQDFGYPPNFPEDVVEEVKEEVS 127

Query: 469 --DIIPXXXXXXXXXXXXXXXXXXXYQWQIMKSIGVPEEEIKEFANESYWLEYFPPRAVT 642
             D I                    YQWQIMKS+G+ +EEIKEF++ ++WL YFPP  + 
Sbjct: 128 AVDEIIKDKSKGKKSKLVAKTGNAKYQWQIMKSLGLCDEEIKEFSDPNHWLYYFPPHCIA 187

Query: 643 DLKRMGIHVD 672
           DLK+MG+  D
Sbjct: 188 DLKKMGLKAD 197


>Z36238-11|CAA85280.1| 1186|Caenorhabditis elegans Hypothetical
           protein R74.1 protein.
          Length = 1186

 Score =  235 bits (574), Expect = 3e-62
 Identities = 113/190 (59%), Positives = 133/190 (70%), Gaps = 4/190 (2%)
 Frame = +1

Query: 115 KVEYLQEIEKKVQERWESQKIFEVEAPDDGKSHEKFLCTFPYPYMNGRLHLGHTFSLSKC 294
           KV  LQEIEK +QE WES+K FE +A DDGK   K+L TFP+PYMNGRLHLGHTFS SKC
Sbjct: 10  KVAQLQEIEKSIQELWESKKAFEADARDDGKP--KYLVTFPFPYMNGRLHLGHTFSASKC 67

Query: 295 EFACRYYRLKGRMVLFPFGFHCTGMPIKACADKLKREMAVYGCPPVFPEDEELIVKDE-- 468
           EFA  + RL+G+ VLFPFGFHCTGMPIKACADKLKREM  +G PP FPED    VK+E  
Sbjct: 68  EFAAGFQRLQGKEVLFPFGFHCTGMPIKACADKLKREMQDFGYPPNFPEDVVEEVKEEVS 127

Query: 469 --DIIPXXXXXXXXXXXXXXXXXXXYQWQIMKSIGVPEEEIKEFANESYWLEYFPPRAVT 642
             D I                    YQWQIMKS+G+ +EEIKEF++ ++WL YFPP  + 
Sbjct: 128 AVDEIIKDKSKGKKSKLVAKTGNAKYQWQIMKSLGLCDEEIKEFSDPNHWLYYFPPHCIA 187

Query: 643 DLKRMGIHVD 672
           DLK+MG+  D
Sbjct: 188 DLKKMGLKAD 197


>Z73912-2|CAA98144.4|  859|Caenorhabditis elegans Hypothetical
           protein ZK524.3a protein.
          Length = 859

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
 Frame = +1

Query: 127 LQEIEKKVQERWESQKIFEVEAPDDGKSH---EKFLCTFPYPYMNGRLHLGHTFSLSKCE 297
           + E  K +++ W    +   E+  +  S+   +K++ +  +PY +GRLH+GH    +  +
Sbjct: 26  ISENTKMLEKHWSKSLVDSFESSKNKPSNLNGKKYILSM-FPYPSGRLHIGHMRVYTISD 84

Query: 298 FACRYYRLKGRMVLFPFGFHCTGMPIK-ACADK 393
              RYYRL G  V+ P G+   G+P + A  DK
Sbjct: 85  ATARYYRLNGYEVIHPIGWDSFGLPAENAARDK 117


>Z73912-3|CAE18063.1|  828|Caenorhabditis elegans Hypothetical
           protein ZK524.3b protein.
          Length = 828

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
 Frame = +1

Query: 142 KKVQERWESQKIFEVEAPDDGKSHEKFLCTFPYPYMNGRLHLGHTFSLSKCEFACRYYRL 321
           K + + +ES K      P +    +  L  FPYP  +GRLH+GH    +  +   RYYRL
Sbjct: 8   KSLVDSFESSK----NKPSNLNGKKYILSMFPYP--SGRLHIGHMRVYTISDATARYYRL 61

Query: 322 KGRMVLFPFGFHCTGMPIK-ACADK 393
            G  V+ P G+   G+P + A  DK
Sbjct: 62  NGYEVIHPIGWDSFGLPAENAARDK 86


>AB096633-1|BAC76733.1|  828|Caenorhabditis elegans leucyl-tRNA
           synthetase (mitochondrial)protein.
          Length = 828

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
 Frame = +1

Query: 142 KKVQERWESQKIFEVEAPDDGKSHEKFLCTFPYPYMNGRLHLGHTFSLSKCEFACRYYRL 321
           K + + +ES K      P +    +  L  FPYP  +GRLH+GH    +  +   RYYRL
Sbjct: 8   KSLVDSFESSK----NKPSNLNGKKYILSMFPYP--SGRLHIGHMRVYTISDATARYYRL 61

Query: 322 KGRMVLFPFGFHCTGMPIK-ACADK 393
            G  V+ P G+   G+P + A  DK
Sbjct: 62  NGYEVIHPIGWDSFGLPAENAARDK 86


>AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical
           protein Y87G2A.5 protein.
          Length = 1050

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
 Frame = +1

Query: 160 WESQKIFEVEAPDD----GKSHEKFLCTFPYPYMNGRLHLGHTFSLSKCEFACRYYRLKG 327
           WE +  F+ E  D         + F    P P + G LH+GH  + +  +   R+ R+ G
Sbjct: 96  WEKEGFFKPEYIDKLNPGSNPADSFTVCIPPPNVTGNLHVGHALATTVEDTITRFNRMHG 155

Query: 328 RMVLFPFGFHCTGMPIKACADK-LKRE 405
           +  LF  G    G+  +   +K LKRE
Sbjct: 156 KRTLFNPGCDHAGIATQVVVEKRLKRE 182


>Z81038-5|CAB02766.3|  970|Caenorhabditis elegans Hypothetical
           protein C25A1.7 protein.
          Length = 970

 Score = 36.3 bits (80), Expect = 0.020
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +1

Query: 241 PYMNGRLHLGHTFSLSKCEFACRYYRLKGRMVLFPFGFHCTGMPIK 378
           PY NG  H GH  +    +F  +     G  VLF  G+ C G+PI+
Sbjct: 96  PYANGEAHTGHAINKILKDFVVKSRIALGYRVLFRPGWDCHGLPIE 141


>U53155-2|AAC48266.2|  918|Caenorhabditis elegans Valyl trna
           synthetase protein 1 protein.
          Length = 918

 Score = 36.3 bits (80), Expect = 0.020
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +1

Query: 235 PYPYMNGRLHLGHTFSLSKCEFACRYYRLKGRMVLFPFGFHCTGMPIKACADKL 396
           P P + G+LHLGH  +++  +  CR+ R +G    +  GF   G+  +   +K+
Sbjct: 4   PPPNVTGKLHLGHALTVAVEDAICRHQRNQGNKAEWIPGFDHAGIATQVVVEKI 57


>AB096631-1|BAC76731.1|  972|Caenorhabditis elegans isoleucyl-tRNA
           synthetase (mitochondrial)protein.
          Length = 972

 Score = 36.3 bits (80), Expect = 0.020
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +1

Query: 241 PYMNGRLHLGHTFSLSKCEFACRYYRLKGRMVLFPFGFHCTGMPIK 378
           PY NG  H GH  +    +F  +     G  VLF  G+ C G+PI+
Sbjct: 96  PYANGEAHTGHAINKILKDFVVKSRIALGYRVLFRPGWDCHGLPIE 141


>Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical
           protein R11A8.6 protein.
          Length = 1141

 Score = 35.5 bits (78), Expect = 0.035
 Identities = 21/85 (24%), Positives = 37/85 (43%)
 Frame = +1

Query: 139 EKKVQERWESQKIFEVEAPDDGKSHEKFLCTFPYPYMNGRLHLGHTFSLSKCEFACRYYR 318
           E KV ++W+ +  F+  + +  K    F      P+  G  H GH  + +  +   R+  
Sbjct: 17  EDKVAQKWQDENTFQ-RSVELSKDRPHFTFYDGPPFATGLPHYGHMLTSTIKDVVGRWAH 75

Query: 319 LKGRMVLFPFGFHCTGMPIKACADK 393
             G  V   FG+   G+P++   DK
Sbjct: 76  QNGHYVERRFGWDTHGLPVEYEIDK 100


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
           protein W01F3.3 protein.
          Length = 2175

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 289 KCEFACRYYRLKGRMVLFPFGFHCTGMPIKACADKLKRE 405
           + +F  RYY   G  V +P+G HC   P +    + K E
Sbjct: 40  RSQFVLRYYLRNGECVSYPYG-HCATDPTEPNLYRYKEE 77


>U29612-7|AAO61437.1|  205|Caenorhabditis elegans Heat shock protein
           protein 25,isoform b protein.
          Length = 205

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -1

Query: 274 YDPNASVHSCMDMEKYTKTSHVISHHQELQLQKSSGSPIFPELSSQFPEDI 122
           Y PN    + +  + Y   S+  SHH+        GSP+ P  S   P D+
Sbjct: 48  YRPNGGPPAAISNQPYNAYSNTSSHHETSNRTGGFGSPL-PPPSFHGPSDL 97


>U29612-6|AAA68804.1|  219|Caenorhabditis elegans Heat shock protein
           protein 25,isoform a protein.
          Length = 219

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -1

Query: 274 YDPNASVHSCMDMEKYTKTSHVISHHQELQLQKSSGSPIFPELSSQFPEDI 122
           Y PN    + +  + Y   S+  SHH+        GSP+ P  S   P D+
Sbjct: 62  YRPNGGPPAAISNQPYNAYSNTSSHHETSNRTGGFGSPL-PPPSFHGPSDL 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,036,781
Number of Sequences: 27780
Number of extensions: 351824
Number of successful extensions: 921
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)