Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5l05
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    25   7.6  
SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr ...    25   7.6  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    25   7.6  

>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 955

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 662  ASTARHCTRPRLERVMF*VSSWPAMSKHLKVRARDKL 552
            A+ ++HCT   + R+   +  W AM +   +  R KL
Sbjct: 915  ANFSKHCTSSEMPRLRAHLQDWTAMYRRRVLTPRAKL 951


>SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 651 ETLHTSTP*ESDVLGLFLAGNEQ 583
           ETL+ S P +S+++G+ L  NE+
Sbjct: 151 ETLNASLPYKSEIIGIGLDSNEE 173


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 315 TYVDRGEKAVI-EYHYLLGHNRVNH 386
           T V + E+A+I E  Y+L H R+ H
Sbjct: 250 TPVTKNERAIIAEEDYMLNHTRIKH 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,261,508
Number of Sequences: 5004
Number of extensions: 37658
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)