Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5l05
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0065 - 40851101-40851247,40851352-40851495,40851781-408518...    28   6.0  
12_01_0078 - 639421-639624,639706-639876,640392-640597,640985-64...    28   7.9  

>01_07_0065 -
           40851101-40851247,40851352-40851495,40851781-40851872,
           40851954-40852035,40852127-40852193,40852284-40852375,
           40852470-40852586,40852764-40852881,40852969-40853161,
           40853258-40853339,40853607-40853744,40853829-40854023
          Length = 488

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 72  EIYNKFYCSAYCFILKTVFCVSLVLLMVLNLHFPF 176
           ++Y   Y          VFC+   L+ +LNLH+PF
Sbjct: 368 QLYTFSYICVTAGAAGIVFCMFYFLVDILNLHYPF 402


>12_01_0078 -
           639421-639624,639706-639876,640392-640597,640985-641100,
           641669-641855,642104-642338
          Length = 372

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -1

Query: 249 SGLNKGDTRTNTVGHFLFRLDRVDETGNVD*AP 151
           SGL K     NTVG FLF L++  E  +   AP
Sbjct: 111 SGLGKCQISENTVGGFLFLLEKEKEKEDCGRAP 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,103,076
Number of Sequences: 37544
Number of extensions: 256014
Number of successful extensions: 632
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)