Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5l02
(717 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb... 101 1e-22
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 46 4e-06
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual 33 0.054
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe... 29 0.66
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 29 0.88
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 27 2.0
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 27 3.5
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 26 4.7
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 26 4.7
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac... 26 6.2
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac... 26 6.2
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 26 6.2
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb... 26 6.2
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 26 6.2
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 25 8.2
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 25 8.2
SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase |Schizosaccharo... 25 8.2
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 25 8.2
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 25 8.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 8.2
>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 298
Score = 101 bits (242), Expect = 1e-22
Identities = 70/192 (36%), Positives = 103/192 (53%), Gaps = 1/192 (0%)
Frame = +3
Query: 138 QKSHRVIPEIKMTEDKEVTVETNGQ-EENAKTENSEDETELDIAIIRQVEYYFGDVNLHR 314
+++ +V+ K T +E ET + E++ K + S DE E +++QVE+YF D NL
Sbjct: 27 EEAGKVVESQKDTTSEEKKEETTEKKEDDGKKDLSFDEAE----VLKQVEFYFSDTNLPH 82
Query: 315 DKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRN 494
DKFL + +DGWVP++ + F R+ + + + I NAL KS LLEV E +KVRR
Sbjct: 83 DKFLWTTSQKNDGWVPIQTIANFKRMRRF-QPLEAIVNALRKSPE-LLEVDEAGEKVRR- 139
Query: 495 PEQPLPEMNEELRKEICNRSIYAKGFAKDASLDDLLNYFKQFQEVENVIMRRYVEKSTKK 674
PL ++ K + RS+Y KGF D D + K F+E I + + K
Sbjct: 140 -MIPLVRVD---NKSVMERSVYCKGFG-DEKDDTQIALEKFFEENAGPISAVRMRRDDDK 194
Query: 675 RLFKGSVFATFK 710
+ FKGSVF FK
Sbjct: 195 K-FKGSVFVEFK 205
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 46.4 bits (105), Expect = 4e-06
Identities = 24/66 (36%), Positives = 40/66 (60%)
Frame = +3
Query: 276 QVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKSTSGL 455
Q+EYYF NL +D FL++ + D+G+VPL L FNR+ + D +++ A S +
Sbjct: 332 QLEYYFSIENLCKDMFLRKHMD-DEGYVPLAFLASFNRIKSFSTDLNLLHAAC--KASDI 388
Query: 456 LEVSED 473
++V+ D
Sbjct: 389 IDVAID 394
>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
Length = 629
Score = 32.7 bits (71), Expect = 0.054
Identities = 19/78 (24%), Positives = 35/78 (44%)
Frame = +3
Query: 117 NKLVF*NQKSHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDETELDIAIIRQVEYYFG 296
NK QK ++ + K E E NG + + E E+E + + + ++
Sbjct: 166 NKCFISPQKDNQGFSKSKHLSTYEGETE-NGFSTSTEEEEEEEEDIVSASWVDNLDMDMA 224
Query: 297 DVNLHRDKFLQEQIKLDD 350
N HR++FL E + +D+
Sbjct: 225 SFNSHRERFLTEHVNMDE 242
>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 29.1 bits (62), Expect = 0.66
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Frame = +3
Query: 291 FGDVNLHRDKFLQEQIKLDDGWVPL--EILTKFNRLAKLTE----DTDVIANALNKSTSG 452
+ +N + KFL + K + L E+ TK +++L E D + L+ ++
Sbjct: 235 YSSLNANTQKFLDDLDKEIFSQIQLAEELQTKLGTVSELVESVPNDVAEVQRRLSSVSTA 294
Query: 453 LLEVSEDNKKVRRNPEQPLPEMNEELRKEICNRSIYAKGFAKDASLDDLLNYFKQFQE 626
LL S++ + +R ++ N + I + AS D L+NYF+QF E
Sbjct: 295 LLIDSDEIETTKRVVDEDTS--NARISSRILDVFKTPGATYPFASNDPLMNYFEQFTE 350
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 28.7 bits (61), Expect = 0.88
Identities = 32/143 (22%), Positives = 59/143 (41%), Gaps = 2/143 (1%)
Frame = +3
Query: 111 SLNKLVF*NQKSHRVIPEIKMTED--KEVTVETNGQEENAKTENSEDETELDIAIIRQVE 284
+LN L N++ V+ ++ + K + +N + K+E ++ E L ++ E
Sbjct: 581 TLNALQKQNKQKGEVLEQVVAESEAAKNMVESSNASIQQLKSEVADKEQTLAQLHLQLDE 640
Query: 285 YYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEV 464
V+L + Q KLD + +I +LA TE+ + L L ++
Sbjct: 641 MTQRLVSLDEESKAVSQRKLD---LEYKINNSKTQLATATEEYHEHSKQLEAEKQELSKL 697
Query: 465 SEDNKKVRRNPEQPLPEMNEELR 533
+ K V E P PE++ R
Sbjct: 698 EDGLKSVNLTEEAPKPEVDSTPR 720
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 27.5 bits (58), Expect = 2.0
Identities = 27/123 (21%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Frame = +3
Query: 231 ENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTED 410
+N++++ ++ + Q+ GDV + KFL +++ + + L LT + + K +
Sbjct: 20 KNTKEKWDVIMDACDQLSSTSGDVGRNSIKFLNKRLDTANANIQLLALTLTDAIVKNCKT 79
Query: 411 TDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNE--ELRKEICNRSIYAKGFAKDA 584
+ V + T LL+++ D+ R + +NE E+ K+ N S+ K
Sbjct: 80 SIVREISSRTFTDSLLKIASDSTTHNRVRSRIAVLVNEWAEIMKKDPNMSLMQDICEKIR 139
Query: 585 SLD 593
LD
Sbjct: 140 KLD 142
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 26.6 bits (56), Expect = 3.5
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 11/110 (10%)
Frame = +3
Query: 414 DVIANALNKSTSGLLEVSEDNKKVRRNPEQPL------PEMNEELRKEIC--NRS---IY 560
D+ AL+ +T E E++K N Q E NE+ +E NR ++
Sbjct: 107 DIRGQALSSATWDNAEDGENSKNDNYNENQSALTGSGAMESNEDNAEETSPFNREDGKMF 166
Query: 561 AKGFAKDASLDDLLNYFKQFQEVENVIMRRYVEKSTKKRLFKGSVFATFK 710
G + + D L +YF+QF EV + + R ST R +G F TFK
Sbjct: 167 IGGLNWETTDDSLRDYFEQFGEVLDCTVMR---DSTTGR-SRGFGFLTFK 212
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +3
Query: 360 PLEILTKFNRLAKLTEDTDVIANALNKSTSGL---LEVSEDNKKVR 488
P+ I TK R A + + +A LN+ TSG+ L + N+ VR
Sbjct: 617 PVLITTKIKRNANIWDLQKHLAGLLNRDTSGIRIWLMTNRQNRTVR 662
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 474 NKKVRRNPEQPLPEMNEELRKEICNRSIYAKGFAKDASL 590
N V R N++ KE+ NR + KGFA D S+
Sbjct: 543 NSAVLRRQSSQSSGANDD--KEVRNRKVVEKGFANDCSV 579
>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 265
Score = 25.8 bits (54), Expect = 6.2
Identities = 17/67 (25%), Positives = 35/67 (52%)
Frame = +3
Query: 135 NQKSHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDETELDIAIIRQVEYYFGDVNLHR 314
N+ S I K + + +V+++ E + + +SEDET+ ++R++E R
Sbjct: 129 NKNSEVSIKRRKTESNSQESVDSSNSESSDEESDSEDETQ---QLLRELENI--KQERKR 183
Query: 315 DKFLQEQ 335
++ LQE+
Sbjct: 184 EQMLQEE 190
>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
Hba1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 6.2
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 141 KSHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDETELDI 263
KS+ V PE+++TE ++ E+N E T +E EL +
Sbjct: 70 KSNGVKPEVEITESTKIQKESN-TEPCISTGGKVEEKELKV 109
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 171 MTEDKEVTVETNGQEENAKTENSEDE 248
+ ED V + +E N + EN+EDE
Sbjct: 464 LVEDTSVDISATLEEANTQQENAEDE 489
>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 6.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 349 SSNFICSCRNLSRC 308
S NF+CSCR S C
Sbjct: 7 SRNFLCSCRGFSVC 20
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 25.8 bits (54), Expect = 6.2
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 597 LLNYFKQFQEVENVI-MRRYVEKSTKKRLFKGSVFATFKTR 716
LLN+FK+++ VE + + R + + K F VF TF+++
Sbjct: 161 LLNFFKKYRSVERIASLSRSISEFQKS--FYEQVFDTFQSQ 199
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 25.4 bits (53), Expect = 8.2
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +3
Query: 492 NPEQPLPEMNEELRKEICN---RSIYAKGFAKDASLDDLLN 605
NPE P+P EEL + N +S + F+ LD ++N
Sbjct: 132 NPENPVPPSTEELANMLSNPMVQSSINEMFSNPQMLDMIIN 172
>SPBC409.12c |||nuclear telomere cap complex subunit
Stn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 25.4 bits (53), Expect = 8.2
Identities = 18/67 (26%), Positives = 27/67 (40%)
Frame = +3
Query: 369 ILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNEELRKEICN 548
I+ K N + L D+I + SGLLE + VR + + + K IC
Sbjct: 242 IVRKSNSVYMLVTSKDIIRFVIPLMASGLLEAHKVQSIVRDSNPMFITLPLSAIAKHICQ 301
Query: 549 RSIYAKG 569
+ KG
Sbjct: 302 FLLRTKG 308
>SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 8.2
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = -1
Query: 354 IRHLILFVLAEIYLDVDLHHQNNIRLA 274
I +++ F +Y+D+D+HH + ++ A
Sbjct: 177 ILNMLRFFPRVLYIDIDIHHGDGVQQA 203
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 25.4 bits (53), Expect = 8.2
Identities = 22/99 (22%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Frame = +3
Query: 138 QKSHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDETEL-DIAIIRQVEYYFGDVNLH- 311
+++ + +PE + T + T E +EE + E E+E E+ + ++E GD++L
Sbjct: 333 EEAVKSLPETQRTTSRIETQEEEIKEEEMEGEEEEEEEEVPNYESENELEDKVGDLSLSL 392
Query: 312 --RDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVI 422
F+ E ++ + + E + L K +E T+++
Sbjct: 393 GVASSFVDEMLR-ERNNLSAEGTSASPSLDKKSESTNIV 430
>SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1021
Score = 25.4 bits (53), Expect = 8.2
Identities = 19/89 (21%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Frame = +3
Query: 180 DKEVTVETNGQEENAKTENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQ-IKLDDGW 356
+K ++ E ++++AK E+ + + E+ ++ ++ +F +L + Q+ I +
Sbjct: 886 EKGLSTEQRDEKKHAKVESFQRQ-EMPRSLFEEI--FFAIDSLTPNPQQQDTVINAVPTF 942
Query: 357 VPLEILTKFNRLAKLTEDTDVIANALNKS 443
P +TKFN+ K+ T + A +S
Sbjct: 943 APYNAMTKFNQKVKVMPGTGKVGKAARES 971
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.4 bits (53), Expect = 8.2
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 558 YAKGFAKDASLD-DLLNYFKQFQEVENVIMRRYVEKSTKKRLFKGSVF 698
Y K K+ + D + L+YF++F + V +R Y ++ K F+ ++F
Sbjct: 983 YTKKNPKEPTADVNSLSYFEKFFVLFVVNLRHYFQERMKALKFRSTLF 1030
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,781,412
Number of Sequences: 5004
Number of extensions: 56029
Number of successful extensions: 215
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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