Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5k23
         (752 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    25   0.86 
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    25   0.86 
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    24   1.1  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   3.5  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   3.5  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   4.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   4.6  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   4.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.0  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   8.0  

>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = -1

Query: 581 PVLCP*GKICFLYLPPHPAPQQTSTPPCP 495
           PVL   GK C    P HP P     P  P
Sbjct: 122 PVLVRDGKPCLSGGPKHPDPGSLQVPGAP 150


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
 Frame = -1

Query: 647 VSVPPDGKCLFRLQPR-----TLLCPEPVLCP*GKICFLYLPPHPAPQQTSTPPCPNP 489
           V + P G  L    P+     +++ P P L P G +C  YL   P PQ    PP P P
Sbjct: 135 VMMSPPGNVLNLTMPKYEPNPSIIDPGPALPPAGFLCNNYL---PLPQ---VPPLPLP 186


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 560 FLTDTEQAPDIAEFGAAGETNIYHLE 637
           F  +  Q P++ +FGA     IYH E
Sbjct: 259 FPLELPQLPNMTKFGAYSSDKIYHPE 284


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 735 GATLGRARDMALSTVLFPAFGNPSNPT 655
           G +   A  + LST   P +G  S+PT
Sbjct: 21  GDSTSSATSIDLSTFRVPTYGTTSHPT 47


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 735 GATLGRARDMALSTVLFPAFGNPSNPT 655
           G +   A  + LST   P +G  S+PT
Sbjct: 21  GDSTSSATSIDLSTFRVPTYGTTSHPT 47


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 539 PPHPAPQQTSTPPCPNPQSLDH 474
           PPHP  Q    P   NP  +++
Sbjct: 738 PPHPHHQPPRNPVGTNPHDINN 759


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 539 PPHPAPQQTSTPPCPNPQSLDH 474
           PPHP  Q    P   NP  +++
Sbjct: 630 PPHPHHQPPRNPVGTNPHDINN 651


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 547 STSRPTPRRNKHQPLPVQIPNHL 479
           ++S P P +   QP P Q PN +
Sbjct: 327 TSSPPPPYQISAQPTPSQSPNQI 349


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +3

Query: 648  WPTSGCWGSRMPGRAPC*EPYRARGPTSHRIPS 746
            WP S     + PG  P    ++     S+R PS
Sbjct: 1146 WPKSAKCEEKKPGHKPSTSSWQKPTKPSYRPPS 1178


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 5/11 (45%), Positives = 11/11 (100%)
 Frame = +2

Query: 434 IVNVPIGTIIK 466
           +VN+P+GT+++
Sbjct: 508 VVNIPLGTVVE 518


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,712
Number of Sequences: 336
Number of extensions: 3910
Number of successful extensions: 17
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)