Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5k23
(752 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 63 5e-11
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 40 4e-04
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 38 0.001
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 38 0.002
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 38 0.002
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 36 0.008
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 35 0.011
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 34 0.025
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 31 0.13
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 31 0.23
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p... 29 0.94
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 1.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.6
SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces pom... 28 1.6
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 27 2.9
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 5.0
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.0
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 26 5.0
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 26 6.6
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 26 6.6
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 6.6
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 6.6
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 25 8.8
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 25 8.8
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 62.9 bits (146), Expect = 5e-11
Identities = 26/67 (38%), Positives = 42/67 (62%)
Frame = +2
Query: 551 NKFFLTDTEQAPDIAEFGAAGETNIYHLEVRSLAHVGLLGFPNAGKSTVLRAISRARPNV 730
N FL++ ++P A G GE + LE++++ +GL+G PNAGKST+L ++ ++ V
Sbjct: 204 NVHFLSENNRSPKFATKGLTGEQKLIELELKTICEIGLVGLPNAGKSTLLNCLTASKSKV 263
Query: 731 APYPFTT 751
Y FTT
Sbjct: 264 GEYEFTT 270
Score = 44.8 bits (101), Expect = 1e-05
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Frame = +2
Query: 167 TRDTVQHYVDSFRVRTVGGNGGDGCISFLSVWCKDHAXXXXXXXXXXXHV-IFKATNSVR 343
T T + D R+R GG+GG GC SF+ + + V + S
Sbjct: 24 TEATQPKFQDKIRIRIQGGDGGQGCSSFIKEKFRPYGPPDGGNGGDGGSVYVAVKPGSFN 83
Query: 344 SLNHCKAVIQAKPGEKGFNKDCSGKNAGHVIVNVPIGTIIK 466
+L+H + +A G G + G VI+ VP GT+I+
Sbjct: 84 NLSHLSQIHKASNGTNGKGGNRHGSCGKSVILYVPPGTVIR 124
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 39.9 bits (89), Expect = 4e-04
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +2
Query: 650 AHVGLLGFPNAGKSTVLRAISRARPNVAPYPFTT 751
A V +GFP+ GKST+L AI++ + A Y FTT
Sbjct: 63 ARVAFIGFPSVGKSTLLSAITKTKSATASYEFTT 96
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 38.3 bits (85), Expect = 0.001
Identities = 17/33 (51%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = +2
Query: 656 VGLLGFPNAGKSTVLRAISRARP-NVAPYPFTT 751
VGL+GFPNAGKS+++ + + + NVAP P T
Sbjct: 313 VGLIGFPNAGKSSIINTLRKKKVCNVAPIPGET 345
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 37.5 bits (83), Expect = 0.002
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 656 VGLLGFPNAGKSTVLRAISRARPNVAPYPFTT 751
VG +GFP+ GKST++ ++ R A Y FTT
Sbjct: 66 VGFIGFPSVGKSTLMTQLTGTRSEAAAYEFTT 97
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 37.5 bits (83), Expect = 0.002
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +2
Query: 668 GFPNAGKSTVLRAISRARPNVAPYPFTT 751
G+PN GKS+ + ++RA+ +V PY FTT
Sbjct: 175 GYPNVGKSSFMNKVTRAQVDVQPYAFTT 202
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 35.5 bits (78), Expect = 0.008
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +2
Query: 656 VGLLGFPNAGKSTVLRAISRARPNVAPYPFTT 751
+G +G P++GKST+L A++ A +PFTT
Sbjct: 7 IGFVGKPSSGKSTMLNALTDATAKTGNFPFTT 38
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 35.1 bits (77), Expect = 0.011
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +2
Query: 659 GLLGFPNAGKSTVLRAISRA-RPNVAPYPFTT 751
G++G PN GKST RAI+++ N A YP+ T
Sbjct: 24 GIVGMPNVGKSTFFRAITKSVLGNPANYPYAT 55
>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 33.9 bits (74), Expect = 0.025
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 656 VGLLGFPNAGKSTVLRAISRAR-PNVAPYPFTT 751
+G++G PN GKST+ + +++ N A YPF T
Sbjct: 48 IGIVGMPNIGKSTLFQILTKTNLGNPANYPFAT 80
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 31.5 bits (68), Expect = 0.13
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +2
Query: 635 EVRSLAHVGLLGFPNAGKSTVLRAISRARPN--VAPYP 742
+++S VG++G+PN GKS+V+ A+ N AP P
Sbjct: 265 KLKSSLTVGVIGYPNVGKSSVINALVNRSANGRSAPCP 302
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 30.7 bits (66), Expect = 0.23
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +2
Query: 95 PNTVSKRPYCDNVPKPLRSLKPKSTRDTVQHYVDSFRVRTVGGNGGDGCISFLSVW 262
P+ ++ P+ DN P S K S RDT HY ++ + + + G S S W
Sbjct: 284 PSLANENPHSDN-PNLKYSSKTLSKRDTSSHYPETLKASSKHSSPVKGNSSISSTW 338
>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 235
Score = 28.7 bits (61), Expect = 0.94
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 581 APDIAEFGAAGETNIYHLEVRSLAHVGLLGFPNAGKSTVLRAISRA 718
APD++ + + L+ + +GL G P +GKST+ +++A
Sbjct: 7 APDVSSYDELYNRAVELLKHQQRVLIGLAGGPGSGKSTLCAILAKA 52
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.9 bits (59), Expect = 1.6
Identities = 18/65 (27%), Positives = 23/65 (35%)
Frame = -1
Query: 683 RHSGTPATRRGPVSVPPDGKCLFRLQPRTLLCPEPVLCP*GKICFLYLPPHPAPQQTSTP 504
RH G + P S P L+P T P P + P +P P +S P
Sbjct: 113 RHIGKSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLP 172
Query: 503 PCPNP 489
P P
Sbjct: 173 PPAQP 177
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1
Query: 542 LPPHPAPQQTSTPPCPNPQSL 480
LPP +TSTPP P P SL
Sbjct: 403 LPPLGNASRTSTPPVPTPPSL 423
>SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 27.9 bits (59), Expect = 1.6
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +1
Query: 460 NKKPKWSSDWGFGQGGVDVCCGAGWG 537
+KKP+ +WG+ +D C G+G
Sbjct: 199 HKKPELKPEWGWDAWNIDTWCPLGYG 224
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 27.1 bits (57), Expect = 2.9
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2
Query: 659 GLLGFPNAGKSTVLRAI 709
GL+G+PN GKS+ + A+
Sbjct: 305 GLVGYPNVGKSSTINAL 321
>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 568 GHRTGSGHSRVRGCRRNKHLPSG 636
GH + +G SR+ G N HLPSG
Sbjct: 85 GHSSYAG-SRISGGNSNSHLPSG 106
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -2
Query: 229 SISSDSPNAKGIYIMLNCISSRLGFQTTERLRHVITVRSFRHCV 98
S D+ N GI ++ + SS++GF + +IT +SF C+
Sbjct: 379 SSGGDNKNDTGIPLIQSS-SSKVGFGPYALSKDLITAKSFHKCI 421
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 267 LHHTLRKDMQPSPPFPPTV 211
L+H+L+ M PS P PP V
Sbjct: 166 LNHSLQNSMPPSTPTPPPV 184
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -1
Query: 704 LSARCSSRHSGTPATRRGPVSVPP 633
L R S SG PA PV+VPP
Sbjct: 1021 LPPRSGSSSSGVPAPNLTPVNVPP 1044
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 659 GLLGFPNAGKSTVLRAISR 715
GL G GKST+LRA+SR
Sbjct: 212 GLTGRNGIGKSTLLRALSR 230
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 542 LPPHPAPQQTSTPPCPNPQSL 480
+ P PAP Q + PP P PQ+L
Sbjct: 240 IAPVPAPNQAALPPIP-PQAL 259
>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 491
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 644 SLAHVGLLGFPNAGKSTVLRAISR 715
S HV ++G N+GKST+L+ +++
Sbjct: 208 SRGHVYVVGEANSGKSTLLKTLAK 231
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 495 KSPIT*PFWFFIIVPIGTLTMTCPAFLPLQS 403
++ IT F+ I+ P+GTL TC FL + S
Sbjct: 1432 RARITTMFYGEILGPLGTLFFTCIPFLFINS 1462
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 447 GTLTMTCPAFLPLQSLLNPF 388
G+LT+ CP + L+ +L PF
Sbjct: 187 GSLTIDCPTPIDLRGMLGPF 206
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,089,935
Number of Sequences: 5004
Number of extensions: 65348
Number of successful extensions: 234
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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