Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5k23
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   4.1  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   7.1  
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    21   9.4  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +1

Query: 562 PHGHRTGSGHSRVRGCRRNKH 624
           PH H  G GHS +     + H
Sbjct: 414 PHHHTMGHGHSHIHATPHHHH 434


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 653 HVGLLGFPNAGKSTVLRAIS 712
           ++G +G    GKST+++AIS
Sbjct: 44  NIGTIGHVAHGKSTIVKAIS 63


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 16/61 (26%), Positives = 22/61 (36%)
 Frame = -1

Query: 689 SSRHSGTPATRRGPVSVPPDGKCLFRLQPRTLLCPEPVLCP*GKICFLYLPPHPAPQQTS 510
           +++  GT  T      +PP      R  P   L P P+ C      F+  P    P   S
Sbjct: 624 TTKRDGTQETEERLPPLPPKR---IRKMPSMPLLPRPISCHTTPDSFIEAPNKTLPSLPS 680

Query: 509 T 507
           T
Sbjct: 681 T 681


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 125 DNVPKPLRSLKPKSTRDTV 181
           DNVP+P+ S +    R+ V
Sbjct: 189 DNVPQPIESFEAAGLRNIV 207


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +2

Query: 407 CSGKNAGHVIVNVPIGTII 463
           CS   A  ++++V +GT++
Sbjct: 1   CSSTEANELVMSVIVGTVV 19


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,594
Number of Sequences: 438
Number of extensions: 4614
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)