Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5k17
         (480 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P41428 Cluster: Uncharacterized 79.9 kDa protein in EGT...   168   5e-41
UniRef50_Q8IHQ0 Cluster: Putative uncharacterized protein; n=4; ...    34   1.9  
UniRef50_A3LU32 Cluster: Dynactin subunit P25; n=2; Saccharomyce...    33   4.4  
UniRef50_Q187J8 Cluster: RNA polymerase sigma factor; n=1; Clost...    32   7.7  

>UniRef50_P41428 Cluster: Uncharacterized 79.9 kDa protein in EGT-IAP1
            intergenic region precursor; n=5;
            Nucleopolyhedrovirus|Rep: Uncharacterized 79.9 kDa
            protein in EGT-IAP1 intergenic region precursor -
            Autographa californica nuclear polyhedrosis virus
            (AcMNPV)
          Length = 690

 Score =  168 bits (409), Expect = 5e-41
 Identities = 92/158 (58%), Positives = 96/158 (60%), Gaps = 7/158 (4%)
 Frame = +2

Query: 2    SFIQTVDNFTRPVLLQLFNKFHIEDYTSASQHSFHQSKIYTNSATPDEDSQDDSNXXXXX 181
            SFI TVDNFTRPVLLQL +KFHI+DYTS   H FHQSKIYTNSA PDEDSQDDSN     
Sbjct: 534  SFIPTVDNFTRPVLLQLPHKFHIKDYTSTPHHFFHQSKIYTNSAAPDEDSQDDSN-TTVV 592

Query: 182  XXXXXXXXXXXXXXXXXXXXXIKKRCHQSNNVTVQYKNNDEFVTICNNLENNRAYINLTN 361
                                 IKKRCHQSNNV VQYKNN+EFVTICNNLE+NRAYINL N
Sbjct: 593  IIAIVAAMILFCGLLLFLFCCIKKRCHQSNNVVVQYKNNNEFVTICNNLEDNRAYINLPN 652

Query: 362  EY-------XXXXXXXXXXXXXXXXXXXXYPMIIERIK 454
            EY                           YPMIIERIK
Sbjct: 653  EYDSDDMPKPLYPLLGFNDDLLKDDKPVLYPMIIERIK 690


>UniRef50_Q8IHQ0 Cluster: Putative uncharacterized protein; n=4;
            Eukaryota|Rep: Putative uncharacterized protein -
            Plasmodium falciparum (isolate 3D7)
          Length = 3207

 Score = 33.9 bits (74), Expect = 1.9
 Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 3/106 (2%)
 Frame = +2

Query: 56   NKFHIEDYTSASQHSFHQSKIYTNSATPDEDSQDDSNXXXXXXXXXXXXXXXXXXXXXXX 235
            N  HI +  S +Q  +H SKI  N+   D+D+ +++N                       
Sbjct: 2225 NNMHILNNNSINQTYYH-SKIKNNNNNDDDDNNNNNNNNNNDNNDNNNIMMHNNYQPFLY 2283

Query: 236  XXXIKKRCHQSNNVTVQYKNNDEFVTI-CNN--LENNRAYINLTNE 364
                 K  H  N   +Q + N  F  I CN   +ENN+  IN++N+
Sbjct: 2284 ENQYNKHIHMMNQ-QIQKETNTSFKHITCNQKFIENNK--INISND 2326


>UniRef50_A3LU32 Cluster: Dynactin subunit P25; n=2;
           Saccharomycetaceae|Rep: Dynactin subunit P25 - Pichia
           stipitis (Yeast)
          Length = 185

 Score = 32.7 bits (71), Expect = 4.4
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -3

Query: 208 ERCSDNSDNYYHGDITVVLRVFVGRRAVGVNFRLMERML-RRRCVIFNVKFIKKLQ*NRT 32
           + CSD+    YHG +T+     +G   V  +  +  R+L    CV+ N+  I +    R 
Sbjct: 77  QECSDSDSTTYHGPVTIGAYTIIGSNTVVKSANVGNRVLIEDDCVLENLSIIYECCVIRK 136

Query: 31  GKIV 20
           G +V
Sbjct: 137 GTVV 140


>UniRef50_Q187J8 Cluster: RNA polymerase sigma factor; n=1;
           Clostridium difficile 630|Rep: RNA polymerase sigma
           factor - Clostridium difficile (strain 630)
          Length = 177

 Score = 31.9 bits (69), Expect = 7.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 260 HQSNNVTVQYKNNDEFVTICNNLENNRAYINLTN 361
           H  N +T Q    D F+T+ NN+EN + Y    N
Sbjct: 42  HVDNKMTAQDLTQDVFITVINNIENYKHYGKFEN 75


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 361,652,599
Number of Sequences: 1657284
Number of extensions: 5700169
Number of successful extensions: 17561
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17537
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27290400475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)