Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5k17
         (480 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92782-9|CAE17814.1|  329|Caenorhabditis elegans Hypothetical pr...    27   9.3  
U23514-3|AAC46542.2|  421|Caenorhabditis elegans Hypothetical pr...    27   9.3  
U23514-2|AAM48532.1|  418|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AF025468-5|AAB71042.1|  390|Caenorhabditis elegans Hypothetical ...    27   9.3  

>Z92782-9|CAE17814.1|  329|Caenorhabditis elegans Hypothetical
           protein F14F8.12 protein.
          Length = 329

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 304 FIVIFVLHSYVI*LMTPFFY 245
           FI+ FV  ++VI ++TPF Y
Sbjct: 159 FIISFVFFNFVISVLTPFIY 178


>U23514-3|AAC46542.2|  421|Caenorhabditis elegans Hypothetical
           protein F48E8.7a protein.
          Length = 421

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 293 NNDEFVTICNNLENNRAYINLT 358
           N + F+ +C+NL+ NR Y N T
Sbjct: 378 NMELFLEMCSNLKVNRQYFNFT 399


>U23514-2|AAM48532.1|  418|Caenorhabditis elegans Hypothetical
           protein F48E8.7b protein.
          Length = 418

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 293 NNDEFVTICNNLENNRAYINLT 358
           N + F+ +C+NL+ NR Y N T
Sbjct: 375 NMELFLEMCSNLKVNRQYFNFT 396


>AF025468-5|AAB71042.1|  390|Caenorhabditis elegans Hypothetical
           protein T27A1.4 protein.
          Length = 390

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = -1

Query: 429 YNRGLSSFNKSNGFGISSLSSYSLVKLMYARLF 331
           YN G +SF  +NG  + S  ++ +V +++  ++
Sbjct: 353 YNEGCASFRDNNGIDVISRVAFPIVTIVFLIIY 385


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,958,077
Number of Sequences: 27780
Number of extensions: 148856
Number of successful extensions: 393
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)