Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5k17
         (480 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    25   0.42 
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   1.3  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   1.3  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   1.3  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   1.3  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   9.1  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   9.1  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 0.42
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
 Frame = +2

Query: 251 KRCHQSNNVTVQYKNNDEFVTICNNLENN---RAYINLTN 361
           K  H +NN    Y NN+      NN  NN   + Y N+ N
Sbjct: 321 KTIHNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIIN 360


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 251 KRCHQSNNVTVQYKNNDEFVTICNNLENNRAYI 349
           K  H +NN    Y NN+ +   C  L  N  YI
Sbjct: 88  KTIHNNNNYKYNY-NNNNYNNNCKKLYYNINYI 119


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 251 KRCHQSNNVTVQYKNNDEFVTICNNLENNRAYI 349
           K  H +NN    Y NN+ +   C  L  N  YI
Sbjct: 88  KTIHNNNNYKYNY-NNNNYNNNCKKLYYNINYI 119


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 251 KRCHQSNNVTVQYKNNDEFVTICNNLENNRAYI 349
           K  H +NN    Y NN+ +   C  L  N  YI
Sbjct: 88  KTIHNNNNYKYNY-NNNNYNNNCKKLYYNINYI 119


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -1

Query: 432 GYNRGLSSFNKSNGFGISSLSSYSLVKLMYARLFSKLLQIVTNSSLFLYCTVT 274
           G +  LS  ++ NGF ++   S + V+L  AR F    +  +N  + +  TVT
Sbjct: 237 GVSEDLSG-DRINGFTVAQTISRNGVRLSSARAFITPFENRSNLHVIVNATVT 288


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +2

Query: 266 SNNVTVQYKNNDEFVTICNNLEN 334
           SNN      NN+ +  +C N+ +
Sbjct: 86  SNNYNYSNYNNNNYKQLCYNINH 108


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +3

Query: 381 ICQNHWIC 404
           IC N WIC
Sbjct: 373 ICSNGWIC 380


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,918
Number of Sequences: 438
Number of extensions: 2287
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)