Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5k16
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces p...    27   2.8  
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    27   2.8  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    27   2.8  
SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit L8|S...    26   4.9  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   4.9  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    25   8.5  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    25   8.5  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    25   8.5  

>SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 205

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 355 LLDPASSVRNASSGMLRNLSAVKLDICDSLMDQDIMTPLTCYF 483
           LL+P  ++R  S G LRN  + ++D   + + ++I   +   F
Sbjct: 25  LLNPVIAIRQLSHGSLRNSRSCRIDAKSNTLTKEIFPKINNEF 67


>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/55 (27%), Positives = 30/55 (54%)
 Frame = +1

Query: 220 ILDQLQGASVEEKYCGLQTLAMFIEIPENIDEVINQGLVKVAAPLLLDPASSVRN 384
           +L  L+  +  ++   L+ L  ++    +I       L+K+ +PL+LD +SSVR+
Sbjct: 62  LLGMLKHHNANQRQETLEKLTQYVLSHTSILTTSTALLLKLTSPLILDESSSVRD 116


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 355 LLDPASSVRNASSGMLRNLSAVKLDICDSLMDQDIMTPLTCYFH 486
           L+D  S ++ A S +LRN  A+   +CD L   +   PLT   H
Sbjct: 134 LIDNHSCIQTAVSHLLRNHQALFKYLCDYLRSGEF--PLTVLIH 175


>SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 207

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/42 (26%), Positives = 25/42 (59%)
 Frame = +2

Query: 95  LQAKWVRFEKLRLVKSKTLWLAKRAMKKSNFQMIAKRMRFKR 220
           +Q  W + ++ +    K + +AKRA  ++N + +A+ M F++
Sbjct: 34  IQTTWAKAKEAQRFAEKLITMAKRANPQNNRKGLAEGMVFEK 75


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = +1

Query: 454 DIMTPLTCYFHEHAESWIPDPISKSRDEDIDTFVQCVNLLLNLCESSDL 600
           D +     YFHEH +    DP +  +D+   T ++       + E ++L
Sbjct: 510 DALLNFIYYFHEHLQPCYNDPNNTFKDDVAKTLIESKKRKAIIIEGAEL 558


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
 Frame = +3

Query: 261 LRFANFGNVYRDSREY**SYKPGSC----KSCCSFIAGSC*FCEKCIIWYASKSICC 419
           L+  N G+     ++   S KP  C    KSCCS    SC   EK       K+ CC
Sbjct: 216 LKSVNEGSSCCSKKDSSPSEKPSCCSQEKKSCCSSKKPSCCSQEKKGCCSTEKTSCC 272


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +1

Query: 469 LTCYFHEHAESWIPDPISKSRDEDIDTFVQCVNLLLNLCESSDLAVKYVGQSRILDIL 642
           L+CY   H    I   I     +    F  C +  L L E+  LA+++    R+LD+L
Sbjct: 460 LSCYVEIHDSPSIRKLIDIGEIDFDQAFKICYDSNL-LDEAKHLAIRFNNNERVLDVL 516


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = +1

Query: 238 GASVEEKYCGLQTLAMFIE---IPENIDEVINQGLVKVAAPLLLDPASSVRN 384
           G  VE K    +T   F+E   +P   DE  + G    AAP LLD  SS  N
Sbjct: 459 GLVVENKK-NTETALSFLERNHLPNLQDETQHIGTATYAAPELLDAMSSQHN 509


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,845,685
Number of Sequences: 5004
Number of extensions: 55971
Number of successful extensions: 180
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)