Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5k16
(738 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0147 + 17690840-17691687,17692328-17692532,17693048-176931... 35 0.059
10_05_0042 + 8481227-8481764,8482291-8482418,8483349-8483933,848... 29 2.9
07_03_1169 + 24501594-24502826 29 2.9
02_01_0070 + 495570-495647,495692-496075 29 2.9
05_07_0299 - 29073900-29073984,29074125-29074158,29074269-290743... 29 5.1
01_05_0162 + 18759647-18759663,18760128-18760131,18760270-187606... 29 5.1
08_01_0090 - 649631-651162,653189-655019,655313-655365,655731-65... 28 6.7
02_01_0706 + 5270233-5270326,5270767-5270914,5271018-5271089,527... 28 6.7
03_02_0052 + 5285061-5285106,5285711-5285754,5286317-5286539,528... 28 8.9
>03_04_0147 +
17690840-17691687,17692328-17692532,17693048-17693199,
17693306-17693597,17693807-17693962,17694561-17694764,
17694875-17694987,17695078-17695192,17695293-17695382,
17695463-17695666,17695764-17695859,17696094-17696216,
17696308-17696400,17696477-17696641,17697179-17697268,
17697356-17697520
Length = 1036
Score = 35.1 bits (77), Expect = 0.059
Identities = 24/86 (27%), Positives = 47/86 (54%)
Frame = +1
Query: 196 SKENAVQTILDQLQGASVEEKYCGLQTLAMFIEIPENIDEVINQGLVKVAAPLLLDPASS 375
S ++++++ L + L+ + ++ E I EVIN+ + + + +DP
Sbjct: 300 SSFTTIKSVMNNLYDGLKDVLLALLKNMDTREKVLEFIAEVINKNAGR--SRMQVDP--- 354
Query: 376 VRNASSGMLRNLSAVKLDICDSLMDQ 453
+++ASSGM NLSAV L +C+ +D+
Sbjct: 355 LKSASSGMFVNLSAVMLRLCEPFLDR 380
>10_05_0042 +
8481227-8481764,8482291-8482418,8483349-8483933,
8484033-8484061,8485221-8485612,8486038-8486454,
8486587-8486668,8487116-8487686
Length = 913
Score = 29.5 bits (63), Expect = 2.9
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = +1
Query: 469 LTCYFHEHAESWIPDPISKSRDEDIDTFVQCVNLLLNLCESSDLAVKYVGQSRILDI--L 642
LTC H+ I ISKS DE++ T V + LC+ L V + S D+ +
Sbjct: 661 LTCRLHDMILDLI---ISKSTDENLFTIVNDSKFMRRLCDFRSLQVLILENSDQQDLTGI 717
Query: 643 PRYLDMSLFGIDIVAAVLQCLFV 711
+SL G+ A LQ LF+
Sbjct: 718 CTLTKLSLNGLFKSAHHLQRLFL 740
>07_03_1169 + 24501594-24502826
Length = 410
Score = 29.5 bits (63), Expect = 2.9
Identities = 22/75 (29%), Positives = 35/75 (46%)
Frame = +1
Query: 241 ASVEEKYCGLQTLAMFIEIPENIDEVINQGLVKVAAPLLLDPASSVRNASSGMLRNLSAV 420
A+V L A E + ++ + V +AAP L + S R A++GMLRN+ A
Sbjct: 82 AAVTHLCVDLADAAAVAEALAPLTDITHVFYVALAAPHLAEARS--REANAGMLRNVLAA 139
Query: 421 KLDICDSLMDQDIMT 465
+ C +L + T
Sbjct: 140 VVPTCPALAHVALQT 154
>02_01_0070 + 495570-495647,495692-496075
Length = 153
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = -2
Query: 725 LSSTTTNRHCSTAATMSIPNNDISKYLGSISSILD*PTYLTA 600
L+ +T RH AA S N+D S L ++SS D YL A
Sbjct: 72 LARSTAARHVHLAAPSSFDNDDDSGRLAALSSFDDNDRYLVA 113
>05_07_0299 -
29073900-29073984,29074125-29074158,29074269-29074351,
29074457-29074607,29074853-29074957,29075099-29075168,
29075374-29075410,29076732-29076843,29076956-29076983
Length = 234
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +1
Query: 475 CYFHEHAESWIPDPISKSRDEDIDTFVQCVNLLLNLCESSDLAVKYVGQSRIL 633
CY H S IP PI+ S + ++ C L ESS +A + IL
Sbjct: 138 CYAHGKFASGIPYPITLSAVISLSGWLPCSRTLRGKMESSHIAARRAASLPIL 190
>01_05_0162 +
18759647-18759663,18760128-18760131,18760270-18760617,
18760801-18761016,18763367-18763435,18763560-18764209,
18764993-18765089,18765170-18765223,18765305-18765435,
18766818-18767008,18767937-18768574
Length = 804
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 307 IDEVIN-QGLVKVAAPLLLDPASSVRNASSGMLRNLSAVKL 426
IDE++ G V + LL + A++G+LRN+++VKL
Sbjct: 57 IDEIMQFHGCVALIVSLLRSDSVRACEAAAGLLRNITSVKL 97
>08_01_0090 - 649631-651162,653189-655019,655313-655365,655731-655735,
656209-656411,656837-657292,657718-657805,657917-658017,
658404-658631,659128-659445,659528-659812,660148-660711
Length = 1887
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 312 INILWNLYKHCQSLQTAILLFNTCSLQLI 226
+N L +Y C + +A LLF CS++ I
Sbjct: 1051 VNSLITMYSRCGMMSSACLLFRACSVRSI 1079
>02_01_0706 +
5270233-5270326,5270767-5270914,5271018-5271089,
5271153-5271263,5271363-5271434,5271533-5271604,
5272126-5272197,5272281-5272346,5272426-5272491,
5272601-5272971,5273203-5273456,5273886-5274157,
5274333-5274474,5275174-5275313,5275381-5275537,
5275797-5275965,5276048-5276088
Length = 772
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 259 YCGLQTLAMFIEIPENIDEVINQGLVKVAAPLLLDPAS 372
+CGL L+ F+ E +N G V AP L DPA+
Sbjct: 589 HCGLARLSQFVSAIRTDSEALNSGKGYV-APELTDPAT 625
>03_02_0052 +
5285061-5285106,5285711-5285754,5286317-5286539,
5286664-5286827,5286918-5288144
Length = 567
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/35 (40%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
Frame = -2
Query: 599 KSELSH-KFNNKLTH*T-NVSISSSLDLEIGSGIH 501
++EL+H ++ +TH + N S+S S+ +E+GSG H
Sbjct: 528 QAELAHGEYKVTVTHPSLNTSVSQSVKVEMGSGSH 562
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,152,262
Number of Sequences: 37544
Number of extensions: 314110
Number of successful extensions: 834
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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