Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5k16
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    24   1.3  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    22   5.2  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   6.9  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   9.1  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   9.1  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   9.1  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 505 IPDPISKSRDEDIDTFVQCVNLLLNLCES 591
           IPD +  ++D DI TFV     +  +C +
Sbjct: 77  IPDVVEAAKDADILTFVVPHQFIKRICSA 105


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 345 SNFYKTLVYNFINI 304
           +N YK L YN INI
Sbjct: 328 NNNYKPLYYNIINI 341


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 342 NFYKTLVYNFINI 304
           N YK L YN INI
Sbjct: 347 NNYKKLYYNIINI 359


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 348 SSNFYKTLVYNFINI 304
           ++N+ K L YN INI
Sbjct: 105 NNNYNKKLYYNIINI 119


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 348 SSNFYKTLVYNFINI 304
           ++N+ K L YN INI
Sbjct: 105 NNNYNKKLYYNIINI 119


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 348 SSNFYKTLVYNFINI 304
           ++N+ K L YN INI
Sbjct: 325 NNNYNKKLYYNIINI 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,561
Number of Sequences: 438
Number of extensions: 3631
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)