Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5k15
         (437 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236124-1|AAF68382.1|  107|Anopheles gambiae thioredoxin 1 prot...    96   4e-22
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    23   4.8  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    23   4.8  
CR954256-2|CAJ14143.1|  295|Anopheles gambiae cyclin protein.          22   8.3  
AY334000-1|AAR01125.1|  268|Anopheles gambiae FBN23 protein.           22   8.3  
AY333999-1|AAR01124.1|  268|Anopheles gambiae FBN23 protein.           22   8.3  
AY333998-1|AAR01123.1|  268|Anopheles gambiae FBN23 protein.           22   8.3  
AY333997-1|AAR01122.1|  268|Anopheles gambiae FBN23 protein.           22   8.3  
AF043441-1|AAC05666.1|  231|Anopheles gambiae putative pupal-spe...    22   8.3  

>AF236124-1|AAF68382.1|  107|Anopheles gambiae thioredoxin 1
           protein.
          Length = 107

 Score = 96.3 bits (229), Expect = 4e-22
 Identities = 42/92 (45%), Positives = 58/92 (63%)
 Frame = +2

Query: 71  IKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXX 250
           +KDS+D   +L  AGD+LVV+DF ATWCGPCK+I PKL+E   +                
Sbjct: 5   VKDSEDFNNKLEAAGDQLVVVDFFATWCGPCKVIAPKLEEFQNKYADKIVVVKVDVDECE 64

Query: 251 XXASEYNINSMPTFVFVKNGKKLDEFSGANVD 346
             A++YNI SMPTF+F+K  + + +FSGAN +
Sbjct: 65  ELAAQYNIASMPTFLFIKRKEVVGQFSGANAE 96


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 390 LVSIYLCLRIVVLSLSTLAPE 328
           LVSI +C+ +VVL++   +P+
Sbjct: 316 LVSISICVTVVVLNVHFRSPQ 336


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 390 LVSIYLCLRIVVLSLSTLAPE 328
           LVSI +C+ +VVL++   +P+
Sbjct: 316 LVSISICVTVVVLNVHFRSPQ 336


>CR954256-2|CAJ14143.1|  295|Anopheles gambiae cyclin protein.
          Length = 295

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 99  GWRKPETSSS*STSWRPGADRAR*SGLNW 185
           GW+    SS  +    PGA RA    L+W
Sbjct: 214 GWKYRSISSLHAPPSHPGAHRAAEPRLDW 242


>AY334000-1|AAR01125.1|  268|Anopheles gambiae FBN23 protein.
          Length = 268

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 391 SCTQPPMETKWN 426
           +CT PP + +WN
Sbjct: 85  NCTTPPQKHQWN 96


>AY333999-1|AAR01124.1|  268|Anopheles gambiae FBN23 protein.
          Length = 268

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 391 SCTQPPMETKWN 426
           +CT PP + +WN
Sbjct: 85  NCTTPPQKHQWN 96


>AY333998-1|AAR01123.1|  268|Anopheles gambiae FBN23 protein.
          Length = 268

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 391 SCTQPPMETKWN 426
           +CT PP + +WN
Sbjct: 85  NCTTPPQKHQWN 96


>AY333997-1|AAR01122.1|  268|Anopheles gambiae FBN23 protein.
          Length = 268

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 391 SCTQPPMETKWN 426
           +CT PP + +WN
Sbjct: 85  NCTTPPQKHQWN 96


>AF043441-1|AAC05666.1|  231|Anopheles gambiae putative
           pupal-specific cuticular proteinCP2b protein.
          Length = 231

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 198 AAISSSLGPIILHGPHQVAMKSITTSLSPA 109
           AA+S+ L P+  HG    +  SI    +PA
Sbjct: 13  AAVSAGLLPVANHGSIATSHSSIQHHAAPA 42


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 385,812
Number of Sequences: 2352
Number of extensions: 6923
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 36568146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)