Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5k14
         (777 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    22   4.8  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   6.3  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   6.3  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    22   6.3  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    22   6.3  

>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 588 INKCVQAGDYYYWPNWPKGQAF 653
           +  CV+  + Y W N P G  F
Sbjct: 512 LQTCVRCPNNYPWVNDPTGDGF 533


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = -3

Query: 733 LLCMIGIVGSMTIPNFIFK 677
           ++C+ G++G++ +P  IFK
Sbjct: 78  IMCL-GVIGNVMVPIVIFK 95


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = -3

Query: 733 LLCMIGIVGSMTIPNFIFK 677
           ++C+ G++G++ +P  IFK
Sbjct: 78  IMCL-GVIGNVMVPIVIFK 95


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -3

Query: 253 LLISYVLSSGTSFK 212
           L++  VLSSGT+FK
Sbjct: 83  LMVVAVLSSGTTFK 96


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -3

Query: 253 LLISYVLSSGTSFK 212
           L++  VLSSGT+FK
Sbjct: 83  LMVVAVLSSGTTFK 96


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,567
Number of Sequences: 336
Number of extensions: 4572
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)