Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5k14
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    28   1.3  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    27   2.3  
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           27   2.3  
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    27   4.0  
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    26   5.2  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    26   5.2  
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ...    26   6.9  
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    26   6.9  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    25   9.2  

>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 321 VNNFQQFLNTIRNNFNGPCAKHDMGSSCEDTE 416
           +N + + L+ ++NNF G   K     SC DTE
Sbjct: 212 LNEYYKSLSKLKNNFRGIIYKTTPYGSCNDTE 243


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 742 PSFLLCMIGIVGSMTIPNFIFKNSCHPLKEKA 647
           P  L C++G   S   PNF+++N  HPL +++
Sbjct: 498 PEELRCLLGEQPSG--PNFVYENETHPLYQQS 527


>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +3

Query: 411 TEEATEKQAVQQTLDGHDWVLESNDFCIFVKPFILKKHYEVIQKYINFEN 560
           T+E  +KQA            ES   C FV P + +K  + +Q+Y+NF +
Sbjct: 208 TKENVKKQASSAGFKEIAEKQESQGLC-FVSPNVGRKFRKFLQRYLNFSD 256


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 368 RSVRKTRHGLVLRRHRRSYRKTGSSTNIRRPRLGVGK*R 484
           +S +KT+  + L +  ++YR      N R+ R G GK R
Sbjct: 159 QSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLR 197


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 368 RSVRKTRHGLVLRRHRRSYRKTGSSTNIRRPRLGVGK*R 484
           +S +KT+  + L +  ++YR      N R+ R G GK R
Sbjct: 159 QSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLR 197


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 558 NFFKSTDPGYINKCVQAG 611
           +   ST+P YINKCV  G
Sbjct: 3   SIISSTNPQYINKCVNNG 20


>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 451

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +3

Query: 531 VIQKYINFENFFKSTDPGYINKCVQAGDYYYW 626
           +++  +   N F+  D  YI   +   DY YW
Sbjct: 367 ILRVLLRIRNLFEHHDVYYIYNAIVLNDYAYW 398


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 402 CEDTEEATEKQAVQQTLDGHDWVLE-SNDFCIFVKPFILKKHY 527
           C +TE+ T+     Q+ + H W  E  N+F +    F  K+H+
Sbjct: 229 CTETEQHTQTLVHFQSRNFHQWYFELVNNFNLLFYGFGSKEHF 271


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 309 LFEYVNNFQQFLNTIRNNFNGPCAKHDMGSSCEDTEEAT 425
           L E++ + ++   +  ++FN   A  DM  S E TEEAT
Sbjct: 557 LDEFIQSGEEVEWSNFSHFNAESALADMNDSVEVTEEAT 595


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,348,409
Number of Sequences: 5004
Number of extensions: 71291
Number of successful extensions: 200
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)