Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5k10
         (769 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099002-2|AAC68740.2|  556|Caenorhabditis elegans Hypothetical ...   171   4e-43
AF099002-1|AAK68587.1|  559|Caenorhabditis elegans Hypothetical ...   171   4e-43
AF099002-3|AAO91691.1|  570|Caenorhabditis elegans Hypothetical ...    86   3e-31
AF003132-1|AAB54133.3|  798|Caenorhabditis elegans Hypothetical ...    32   0.39 
Z82073-3|CAB04926.1|  631|Caenorhabditis elegans Hypothetical pr...    29   4.8  
U97000-8|AAC47999.1|  347|Caenorhabditis elegans Seven tm recept...    28   8.4  

>AF099002-2|AAC68740.2|  556|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1a protein.
          Length = 556

 Score =  171 bits (417), Expect = 4e-43
 Identities = 75/121 (61%), Positives = 93/121 (76%)
 Frame = +2

Query: 368 IFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVKGYPREILEFEYDPS 547
           +FVNRSL LE +  +GFDMDYTL +YK+P  E L FN+  +RLV  GYP EI  F+YDP 
Sbjct: 13  VFVNRSLRLEKITHFGFDMDYTLVQYKAPDMEYLAFNMAVQRLVDTGYPEEIKSFKYDPI 72

Query: 548 FPVRGLWFDTLYGNLLKVDAYGNILVCVHGFEFLKHSQVYELYPNKFLTLDESRVYVLNT 727
           FPVRGLWF+  +GNLLKVD +GNIL  +HG  FLK+ ++ E+YPNK+L L +SRVYVLNT
Sbjct: 73  FPVRGLWFEFQFGNLLKVDGFGNILGGIHGLRFLKNHEIEEMYPNKYLPLSDSRVYVLNT 132

Query: 728 L 730
           L
Sbjct: 133 L 133


>AF099002-1|AAK68587.1|  559|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1b protein.
          Length = 559

 Score =  171 bits (417), Expect = 4e-43
 Identities = 75/121 (61%), Positives = 93/121 (76%)
 Frame = +2

Query: 368 IFVNRSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVKGYPREILEFEYDPS 547
           +FVNRSL LE +  +GFDMDYTL +YK+P  E L FN+  +RLV  GYP EI  F+YDP 
Sbjct: 16  VFVNRSLRLEKITHFGFDMDYTLVQYKAPDMEYLAFNMAVQRLVDTGYPEEIKSFKYDPI 75

Query: 548 FPVRGLWFDTLYGNLLKVDAYGNILVCVHGFEFLKHSQVYELYPNKFLTLDESRVYVLNT 727
           FPVRGLWF+  +GNLLKVD +GNIL  +HG  FLK+ ++ E+YPNK+L L +SRVYVLNT
Sbjct: 76  FPVRGLWFEFQFGNLLKVDGFGNILGGIHGLRFLKNHEIEEMYPNKYLPLSDSRVYVLNT 135

Query: 728 L 730
           L
Sbjct: 136 L 136


>AF099002-3|AAO91691.1|  570|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1c protein.
          Length = 570

 Score = 85.8 bits (203), Expect(2) = 3e-31
 Identities = 37/62 (59%), Positives = 48/62 (77%)
 Frame = +2

Query: 545 SFPVRGLWFDTLYGNLLKVDAYGNILVCVHGFEFLKHSQVYELYPNKFLTLDESRVYVLN 724
           +F   GLWF+  +GNLLKVD +GNIL  +HG  FLK+ ++ E+YPNK+L L +SRVYVLN
Sbjct: 86  NFLYLGLWFEFQFGNLLKVDGFGNILGGIHGLRFLKNHEIEEMYPNKYLPLSDSRVYVLN 145

Query: 725 TL 730
           TL
Sbjct: 146 TL 147



 Score = 67.7 bits (158), Expect(2) = 3e-31
 Identities = 29/47 (61%), Positives = 34/47 (72%)
 Frame = +2

Query: 422 MDYTLAEYKSPQYETLGFNLTKERLVVKGYPREILEFEYDPSFPVRG 562
           MDYTL +YK+P  E L FN+  +RLV  GYP EI  F+YDP FPVRG
Sbjct: 1   MDYTLVQYKAPDMEYLAFNMAVQRLVDTGYPEEIKSFKYDPIFPVRG 47


>AF003132-1|AAB54133.3|  798|Caenorhabditis elegans Hypothetical
           protein F37E3.1 protein.
          Length = 798

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +2

Query: 479 LTKERLVVKGYPREILEF-EYDPSFPVRGLWFDTLYGNLLKVD--AYGNILVCVHGFEFL 649
           + K +   K   RE+L F E +PS P+  L F+T++G +L++    Y  I  C    E L
Sbjct: 325 IEKNQFNRKACARELLAFAEENPSVPIGFLIFETIFGQMLRLPHAPYPAIFHCSLVLELL 384

Query: 650 K 652
           K
Sbjct: 385 K 385


>Z82073-3|CAB04926.1|  631|Caenorhabditis elegans Hypothetical
           protein W06D12.5 protein.
          Length = 631

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 575 TLYGNLLKVDAYGNILVCVHGFEFLKHSQVYELYPNKFLTLDESRVY 715
           T YG++      G +LVCV+GF F+  + V      +F  +  +++Y
Sbjct: 330 TGYGSIAPESTLGQVLVCVYGFIFVPVTLVVLRDLGQFFLVHLTKLY 376


>U97000-8|AAC47999.1|  347|Caenorhabditis elegans Seven tm receptor
           protein 136 protein.
          Length = 347

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 454 WRFVFGQCIVHIKTVKFNIF*MQRSVNENYKVGQ 353
           W  + GQ + H+K   F +F    S+N +Y +G+
Sbjct: 60  WVEIIGQPVAHMKGSMFVVFTHNLSINLSYSLGE 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,581,022
Number of Sequences: 27780
Number of extensions: 383170
Number of successful extensions: 845
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)