Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5k06
(731 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 50 5e-07
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 47 3e-06
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 45 1e-05
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 42 9e-05
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 41 2e-04
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 40 3e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 39 6e-04
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 36 0.005
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 36 0.005
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 36 0.005
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 34 0.018
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 34 0.018
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 34 0.024
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 34 0.024
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 33 0.042
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 33 0.056
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 30 0.30
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 29 0.90
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 29 0.90
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 28 1.2
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 28 1.2
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 27 2.1
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 27 2.1
SPAC23H3.07c |mrp2||mitochondrial ribosomal protein subunit S14|... 27 2.8
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 27 2.8
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos... 27 3.6
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 26 4.8
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 26 4.8
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 26 6.4
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 26 6.4
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 25 8.4
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa... 25 8.4
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 49.6 bits (113), Expect = 5e-07
Identities = 25/62 (40%), Positives = 37/62 (59%)
Frame = +2
Query: 542 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAMKH 721
I + LT NVT++HI EIF YG + I P+ + N +GY Y+E+ D+A NA+
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELN-KGYCYIEYVYHDQAANAVDK 159
Query: 722 MD 727
M+
Sbjct: 160 MN 161
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 46.8 bits (106), Expect = 3e-06
Identities = 18/63 (28%), Positives = 38/63 (60%)
Frame = +2
Query: 539 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAMK 718
R+ + LT + D + +F +G ++ + P+D+ +N +G+AY++F++AD+A A
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDK-KTNNPKGFAYIDFHDADDAVRAYL 382
Query: 719 HMD 727
+D
Sbjct: 383 ELD 385
Score = 41.5 bits (93), Expect = 1e-04
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +2
Query: 536 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAM 715
T+I I L T+ + + YG ++S+ P + + RG+A+ EF A EA NAM
Sbjct: 721 TKILIKNLPFEATKKDVQSLLGAYGQLRSVRVP--KKFDRSARGFAFAEFVTAREAANAM 778
Query: 716 K 718
+
Sbjct: 779 R 779
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 45.2 bits (102), Expect = 1e-05
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Frame = +2
Query: 539 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHN---GRGYAYVEFNNADEAEN 709
R+ +GRL+ + + I +F T GTV+ + P R+ G A+V FNN ++ +
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 710 AMKHMDG 730
A++ ++G
Sbjct: 105 AIETLNG 111
Score = 32.7 bits (71), Expect = 0.056
Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 13/125 (10%)
Frame = +2
Query: 395 EKIRDRSPTGEKKKSVLPLSNDKAKIKEKQXXXXXXXXXXXXXXXXX--TRIHIGRLTLN 568
E + S E + P SN+ + +KQ I++ L++
Sbjct: 156 ESAKGSSDENEANTATAPSSNEANGVDKKQNEIKGKGGSGKNKAKPLPPNSIYVSGLSVT 215
Query: 569 VTRDHIHEIFSTYG------TVKSIE-FPMDRL----HPHNGRGYAYVEFNNADEAENAM 715
+T + + E+F Y V+S+ + + R+ GRG+ +V F NA++ A+
Sbjct: 216 LTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFVSFANAEDQSRAI 275
Query: 716 KHMDG 730
+ M+G
Sbjct: 276 EEMNG 280
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 41.9 bits (94), Expect = 9e-05
Identities = 20/62 (32%), Positives = 35/62 (56%)
Frame = +2
Query: 542 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAMKH 721
+++G L +VT + E+F++ G V SI D + GYAYV F+N ++ E A+
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAV-TRRSLGYAYVNFHNMEDGEKALDE 140
Query: 722 MD 727
++
Sbjct: 141 LN 142
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 41.1 bits (92), Expect = 2e-04
Identities = 19/62 (30%), Positives = 36/62 (58%)
Frame = +2
Query: 542 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAMKH 721
+H+G L +VT ++ F +G + S+ + R R YA+VEF+ ++A+ AM++
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVA--LHRKEKAVDRSYAFVEFDEPEDAKEAMEN 65
Query: 722 MD 727
M+
Sbjct: 66 MN 67
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 40.3 bits (90), Expect = 3e-04
Identities = 18/64 (28%), Positives = 35/64 (54%)
Frame = +2
Query: 539 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAMK 718
+I+I L LN+ D + E+ +G + S + + + + +G+ + EF N +AE A+
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQL-IKNIADGSSKGFCFCEFKNPSDAEVAIS 369
Query: 719 HMDG 730
+DG
Sbjct: 370 GLDG 373
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 39.1 bits (87), Expect = 6e-04
Identities = 15/64 (23%), Positives = 34/64 (53%)
Frame = +2
Query: 539 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAMK 718
R+ + + N+T + + IF +G ++ + D + +G+ Y+++ N A NA++
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD--DQNRSKGFGYIQYRNPISARNALE 398
Query: 719 HMDG 730
M+G
Sbjct: 399 KMNG 402
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 36.3 bits (80), Expect = 0.005
Identities = 21/99 (21%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Frame = +2
Query: 425 EKKKSVLPLSNDKAKIK--EKQXXXXXXXXXXXXXXXXXTRIHIGRLTLNVTRDHIHEIF 598
E K+ V + + AK++ ++Q +++G + +VT + + F
Sbjct: 16 EMKERVAEMEAEAAKLRAMQEQLDNETEALRNDKESIDAQSVYVGNVDYSVTPEELQSHF 75
Query: 599 STYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAM 715
++ G+V + D+ H +G+AY+EF+ NA+
Sbjct: 76 ASCGSVNRVTILCDKFTGHP-KGFAYIEFSEPSLVPNAL 113
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 36.3 bits (80), Expect = 0.005
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = +2
Query: 542 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAE----- 706
+ +GRL+ NV + + F YGT+ MD +GY YV+F + A+
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDG-QSGRSKGYGYVDFETPEAAKAAVAA 323
Query: 707 NAMKHMDG 730
N K +DG
Sbjct: 324 NGTKEIDG 331
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 36.3 bits (80), Expect = 0.005
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +2
Query: 584 IHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAMK 718
I ++FS YG V + FP L + R + YV+ DEA NA++
Sbjct: 682 ITKLFSAYGNVVDVRFPS--LRYNTNRRFCYVQMRKPDEAHNALQ 724
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 34.3 bits (75), Expect = 0.018
Identities = 15/64 (23%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +2
Query: 542 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNG--RGYAYVEFNNADEAENAM 715
+++G + + + + +IF G VKS + +D P +G +GY + E+++ A +A+
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVID---PESGQPKGYGFCEYHDPATAASAV 63
Query: 716 KHMD 727
++++
Sbjct: 64 RNLN 67
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 34.3 bits (75), Expect = 0.018
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +2
Query: 545 HIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAM 715
H+G L+ ++T + + + F V SI +D L RG+ YVEF AD A+
Sbjct: 97 HVGNLSFDLTENDLGDFFGE--GVTSIRLVIDPL-TERSRGFGYVEFETADTLSAAL 150
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 33.9 bits (74), Expect = 0.024
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 11/74 (14%)
Frame = +2
Query: 542 IHIGRLTLNVTRDHIHEIFSTYGTVKSIE-------FPMDRLHPH----NGRGYAYVEFN 688
I++G + ++ + I + FS YG V+SI +P ++ P NG Y +V+F
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQYGFVKFV 78
Query: 689 NADEAENAMKHMDG 730
NA+ E +K G
Sbjct: 79 NAESIEEVLKDAKG 92
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 33.9 bits (74), Expect = 0.024
Identities = 15/61 (24%), Positives = 34/61 (55%)
Frame = +2
Query: 542 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAMKH 721
+++G L+ T + I+ +FS G ++ I +DR G+ +VE+ +A +++K+
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRF-TKTPCGFCFVEYFENQDALDSLKY 92
Query: 722 M 724
+
Sbjct: 93 I 93
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 33.1 bits (72), Expect = 0.042
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +2
Query: 536 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAM 715
T + +G L VT I ++++T G ++ +R N GY +VEF + EA +AM
Sbjct: 93 TTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNA-GYCFVEFASPHEASSAM 151
Score = 29.9 bits (64), Expect = 0.39
Identities = 15/63 (23%), Positives = 31/63 (49%)
Frame = +2
Query: 542 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAMKH 721
+ +G L+ V+ + + +F +G + ++ P G+G +V+F N AE A+
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYVKIPP-------GKGCGFVQFVNRQSAEIAINQ 357
Query: 722 MDG 730
+ G
Sbjct: 358 LQG 360
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 32.7 bits (71), Expect = 0.056
Identities = 13/62 (20%), Positives = 33/62 (53%)
Frame = +2
Query: 542 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAMKH 721
+ + + + D + +IFS +GTV + + + RG+ ++ F+ +EA +A+ +
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPV-TKASRGFGFLSFSTVEEATSAIDN 161
Query: 722 MD 727
++
Sbjct: 162 LN 163
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 30.3 bits (65), Expect = 0.30
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +2
Query: 542 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAM 715
+++ L + + IH +FS YG VK I L P N +Y ++A A +A+
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWM----LSPDNSAIVSYESLSSAIVARDAL 55
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 28.7 bits (61), Expect = 0.90
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 569 VTRDHIHE-IFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENA 712
VT+D E IFS +G + S + D+ + YA++EF+N + E A
Sbjct: 254 VTQDEDLELIFSRFGKIISCQVIRDK-ETGDSLQYAFIEFDNKESVEKA 301
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 28.7 bits (61), Expect = 0.90
Identities = 12/63 (19%), Positives = 31/63 (49%)
Frame = +2
Query: 542 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAMKH 721
+ + L+ + + + ++F +G ++ + D+ +G+A+V + + D A A
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDK-ETGRAKGFAFVSYYDRDCAIKARDR 262
Query: 722 MDG 730
+DG
Sbjct: 263 LDG 265
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = +2
Query: 542 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAMKH 721
I+IG L ++ D I +FS +G I D+ +G+A++++ + A+ +
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDK-ETGKSKGFAFLKYEDQRSTVLAVDN 91
Query: 722 M 724
M
Sbjct: 92 M 92
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 28.3 bits (60), Expect = 1.2
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = +2
Query: 554 RLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAMK 718
++ N R ++ +FSTYGTV I L RG A+V F + A AMK
Sbjct: 14 KINKNDLRTALYMLFSTYGTVVDIV----ALKTPKMRGQAHVVFFDPSAAAIAMK 64
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/65 (23%), Positives = 29/65 (44%)
Frame = +2
Query: 536 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAM 715
TR+ +GR+ TR+ + + F YG + + G+ +VE +A +A + +
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQILDCKLM---------NGFGFVEVEDARDARDIV 54
Query: 716 KHMDG 730
G
Sbjct: 55 NDFQG 59
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Frame = +2
Query: 542 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRG----YAYVEFNNADEAEN 709
I++G L +HE+F +G + + +A++ F N A+N
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81
Query: 710 AMKHMDG 730
A+ ++G
Sbjct: 82 AIASLNG 88
>SPAC23H3.07c |mrp2||mitochondrial ribosomal protein subunit
S14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +3
Query: 387 LIGRRLEIDHQQEKKKNLCYLYQMTKLKLR 476
L+ RRL +H+ E++ NL Y+Y+ +L LR
Sbjct: 15 LLCRRLFAEHEVERQSNL-YIYRNPELPLR 43
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -2
Query: 709 IFCFISIIKLNI-CVSSSIMWVKSVHRKLN*FHSTICRKYFMDVITRYI 566
IF F ++ + I C ++ +W K V RKL ++ T + F+ ++ +I
Sbjct: 577 IFIFALVVSMAIYCTAAYFVWQKKVERKL--WYLTNSKLSFVPILVSFI 623
>SPAC15A10.13 |ppk3||serine/threonine protein kinase
Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 637
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 413 SPTGEKKKSVLPLSNDKAKIKEKQ 484
SP+ + KK L L ND +IKEK+
Sbjct: 562 SPSIDMKKESLELKNDTTEIKEKK 585
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/58 (18%), Positives = 26/58 (44%)
Frame = +2
Query: 542 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAM 715
+ +G L + + F G++ + D + G+G+AY++F + + A+
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDP-KTNLGKGFAYIQFKDTMGVDKAL 328
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 371 KDRRDADREKIRDRSPTGEKKKSVLPLSNDK 463
K RR A+REK+R G+K K L + K
Sbjct: 479 KARRRAEREKLRSEGLLGKKSKKKLLRESQK 509
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.8 bits (54), Expect = 6.4
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +2
Query: 542 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAMKH 721
I++G L + + + + +FST K + F P +VEF N A A+K+
Sbjct: 428 IYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGP-----MCFVEFENIPYAMEALKN 482
Query: 722 MDG 730
+ G
Sbjct: 483 LQG 485
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Frame = +3
Query: 420 QEKKKNLCYLYQ-MTKLKLRKN 482
+E KK++ YL + + KLKLRKN
Sbjct: 46 EESKKSIIYLEERLEKLKLRKN 67
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +2
Query: 569 VTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAMK 718
V+ ++I I T + I PM + +G+AYV+F D + A++
Sbjct: 136 VSEENIKPI--TTEQITRIHMPMSKEKRFQNKGFAYVDFATEDALKLALQ 183
>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 353 PNKSPLKDRRDADREKIRDRSPTGEKKKSVLPLSNDKAKIKEKQ 484
P+ P+K R R + R + GE +SV K +KE++
Sbjct: 103 PDAPPIKAERKTKRPRARRAANEGEHNESVPAKKVKKNTVKEEE 146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,328,981
Number of Sequences: 5004
Number of extensions: 41189
Number of successful extensions: 165
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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