Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5k05
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc...    31   0.11 
SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr 3...    30   0.35 
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    30   0.35 
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ...    29   0.61 
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    27   1.8  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    27   2.4  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    26   4.3  

>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
           Pho4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 463

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
 Frame = -1

Query: 410 SLRVFEDNNFDKNDVDLSDTRSRKPRIVPIISASSENADYIQTQINLGLIAIYENMVKVL 231
           S  V+EDNN D+N  + + T  R   + PI +  ++   Y  +  NL  ++   ++  + 
Sbjct: 209 SCPVYEDNNIDENTTEAAHTSWRNVFLKPIANRLNK---YFDSGYNL-TVSDVRSLYYIC 264

Query: 230 ATHEQANDPNLLQQYFEKSKFKNFDF---LIYVLW 135
                  D +     F  S+F NF++   L Y  W
Sbjct: 265 VYEIALRDNSDFCSLFTPSEFLNFEYDSDLDYAYW 299


>SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 188

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 21/85 (24%), Positives = 42/85 (49%)
 Frame = -1

Query: 473 INLEECITVPKYKHIVNVNLKSLRVFEDNNFDKNDVDLSDTRSRKPRIVPIISASSENAD 294
           ++ + CIT+P    I    LK +R F++   +KN + LS++   +      +  + E A 
Sbjct: 56  LDKDNCITLPNETTIAEAELKKIREFQNIYGEKNVILLSNSIGTRK-----LDPTGELAA 110

Query: 293 YIQTQINLGLIAIYENMVKVLATHE 219
           + Q + N+ ++    + +K L T E
Sbjct: 111 HFQQKWNIPVVR--HSKLKPLCTEE 133


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -1

Query: 521  ELVNSDKNFFNYIRDDINLEECITVPKYKHIVNVNLKSLRVFED-NNFDKNDVDLSD 354
            E+  SD +  N   +DIN +EC++         +NL+S     D N+F   +V LSD
Sbjct: 1742 EIYASDSDISNSTSEDINKDECVSKDIEVDNFALNLQSQSYEGDSNDFGIREVPLSD 1798


>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 22/83 (26%), Positives = 36/83 (43%)
 Frame = -1

Query: 401 VFEDNNFDKNDVDLSDTRSRKPRIVPIISASSENADYIQTQINLGLIAIYENMVKVLATH 222
           VF+DNNF KN  D +    R   I PI+   +  A Y  +   L +  +  ++  +    
Sbjct: 212 VFKDNNFHKNATDAAHAVWRNIFIEPIV---NRLAKYFDSSYKLTINDV-RSLFYICEYE 267

Query: 221 EQANDPNLLQQYFEKSKFKNFDF 153
               D +     F  S+F NF++
Sbjct: 268 IAIKDHSDFCSIFTPSEFLNFEY 290


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/83 (20%), Positives = 34/83 (40%)
 Frame = -1

Query: 608 GKTKFDESHEDLFILKMADGTVVTCKVNGELVNSDKNFFNYIRDDINLEECITVPKYKHI 429
           G+T  D+S +D+  L    GT+VT  +  +      + F+ I+        +   K    
Sbjct: 100 GETSSDDSTDDIAFLNEKMGTLVTTPIGSQKYFGSSSTFSIIQHAAKFASGVESDKVLEH 159

Query: 428 VNVNLKSLRVFEDNNFDKNDVDL 360
           +++         D +FD +  +L
Sbjct: 160 LSMAKSGCLFDPDESFDGSKAEL 182


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -1

Query: 536  CKVNGELVNSDKNFFNYIRDDINLEECITVPK-YKHIVNVNLKSLRVFED 390
            C+ +G +  + K+    + DD NL+  + + K +  IV  NLK L   +D
Sbjct: 1513 CRKSGRISLAKKSLNLLLEDDENLDNSLVLKKTHPSIVYANLKFLWAVDD 1562


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 478 TTLIWKNALRCPNTSILSTSTSKASECS 395
           TTL W NAL C N ++L  S+S ++ C+
Sbjct: 213 TTLSWINALYC-NGNLLYPSSSISATCT 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,800,424
Number of Sequences: 5004
Number of extensions: 60297
Number of successful extensions: 182
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)