Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5k05
         (668 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0393 + 17255315-17256019,17256107-17257909                       32   0.48 
08_01_0373 - 3295130-3295264,3295707-3295834,3295905-3295981,329...    31   1.1  
03_03_0244 - 15772156-15773964,15774190-15774711                       29   2.5  
06_03_1299 - 29149623-29149787,29149984-29150073,29150279-291503...    29   3.3  
02_03_0356 + 18073794-18074052,18074054-18074163                       29   3.3  
10_05_0114 + 9294747-9294788,9294883-9294996,9295066-9295173,929...    28   5.9  

>09_04_0393 + 17255315-17256019,17256107-17257909
          Length = 835

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = -1

Query: 425 NVNLKSLRVFEDNNFDKNDVDLSDTRSRKPRIVPIISASSEN 300
           N++  S+ V   +N D N VD+  + +  P  + ++S+S+E+
Sbjct: 52  NIDPNSVNVLSSSNIDPNSVDILSSSNIDPNSIDVLSSSNES 93



 Score = 28.7 bits (61), Expect = 4.4
 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
 Frame = -1

Query: 428 VNVNLKSLRVFEDNNFDKNDVDLSDTRSRKPRIVPIISASSENADYIQTQINLGLIAIYE 249
           V ++  S+ V   +N D N VD+  + +  P  V I+S+S+ + + +     L    I  
Sbjct: 12  VPIDPNSVDVLSSSNIDPNSVDILSSSNIDPNSVDILSSSNIDPNSVNV---LSSSNIDP 68

Query: 248 NMVKVLATHE-QANDPNLLQQYFEKSKFKNFD 156
           N V +L++     N  ++L    E     +FD
Sbjct: 69  NSVDILSSSNIDPNSIDVLSSSNESKPTISFD 100


>08_01_0373 -
           3295130-3295264,3295707-3295834,3295905-3295981,
           3296283-3296377,3296463-3296591,3296698-3296786,
           3296878-3297060,3297446-3297665,3297756-3297839
          Length = 379

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 5/115 (4%)
 Frame = -1

Query: 362 LSDTRSRKPRIVPIISASSENADYIQTQINLGLIAIYENMVKVLATHEQANDPNLLQQYF 183
           L+D  +     +P+IS  + N    +  +   + ++Y +      +  +AND     +  
Sbjct: 44  LTDPAAPAISALPLISRGAANRGLRRALLRDDVSSVYLSYASCKRSLTRANDAKAFVRA- 102

Query: 182 EKSKFKNFDFLIYVLWKILT---KNENFSYRETDIKLFLELLCES--LFACDKEI 33
           +KS F +F F +  +WK++    K        T  +LF  LL ES   F C + +
Sbjct: 103 KKSVFDSFSFALETVWKVMEMCYKILGEGKLVTLRELFYTLLSESPTYFTCQRHV 157


>03_03_0244 - 15772156-15773964,15774190-15774711
          Length = 776

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
 Frame = -1

Query: 455 ITVPKYKHIVNVN-LKSLRVFEDNNFDKNDVDLSDTRSRKPRIVPIISASSENADYIQTQ 279
           + V K +H   V+ LK ++    +  +K+ V  S+      R    ISA+ E    ++ +
Sbjct: 265 LAVAKERHQKAVDELKLVKEEMRSTHEKHTVLASERDIAAKRAEQAISAAKETEKRVE-E 323

Query: 278 INLGLIAIYENMVKVLATHEQANDPNL 198
           + L LIAI E++    A H +A +  L
Sbjct: 324 LTLELIAIKESLESAHAAHHEAEEHKL 350


>06_03_1299 -
           29149623-29149787,29149984-29150073,29150279-29150371,
           29150844-29150916,29151198-29151355
          Length = 192

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = -1

Query: 305 ENADYIQTQINLGLIAIYENMVKVLATHEQANDPNLLQQY-FEKSKFKNF---DFL 150
           E+ +Y++T++ + L    E M+        A DPNL  ++ FE  ++K     DFL
Sbjct: 94  EDVEYVRTRVEISLTDTSETMLADTYVWADAEDPNLYGEWDFEVREWKRLHMKDFL 149


>02_03_0356 + 18073794-18074052,18074054-18074163
          Length = 122

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = -2

Query: 448 CPNTSILSTSTSKASEC--SKXXXXXXXXXXXXTRVPENRASYPLYR--RAAKMQTT 290
           CP+ SIL+T  S AS C  SK            +R P  R+++P     R++K ++T
Sbjct: 39  CPDASILATLRSLASACSKSKLTGLSPSAGVSPSRCPPTRSTFPNLNCMRSSKREST 95


>10_05_0114 +
           9294747-9294788,9294883-9294996,9295066-9295173,
           9295774-9296145,9296584-9296652,9296754-9296825,
           9297070-9297198,9297690-9297770,9298622-9298807,
           9299135-9299860
          Length = 632

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 219 FVGRQNFNHVLVNCYKPQIDLRL 287
           FVGR    +VL+  Y P IDL L
Sbjct: 35  FVGRSELQYVLMGLYTPLIDLHL 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,920,293
Number of Sequences: 37544
Number of extensions: 337941
Number of successful extensions: 895
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)