Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5j19
         (426 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical pr...    28   2.4  
U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical pr...    28   2.4  
U42436-9|AAF99893.1|  109|Caenorhabditis elegans Hypothetical pr...    27   4.3  
U55363-12|AAA97969.1|  320|Caenorhabditis elegans Hypothetical p...    27   7.4  
U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical p...    27   7.4  
Z70267-1|CAA94211.1|  307|Caenorhabditis elegans Hypothetical pr...    26   9.8  
AF039053-16|AAC25869.1|  497|Caenorhabditis elegans Cytochrome p...    26   9.8  
AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical ...    26   9.8  

>U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical
           protein F46F11.9b protein.
          Length = 1282

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 251 STHPTVAKERSDFVACPRLAFDCYKIVSARF 343
           S H  +A  R    A P L+FDCY++    F
Sbjct: 516 SFHRVLAANRFSNAAIPALSFDCYRLALPAF 546


>U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical
           protein F46F11.9a protein.
          Length = 1280

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 251 STHPTVAKERSDFVACPRLAFDCYKIVSARF 343
           S H  +A  R    A P L+FDCY++    F
Sbjct: 514 SFHRVLAANRFSNAAIPALSFDCYRLALPAF 544


>U42436-9|AAF99893.1|  109|Caenorhabditis elegans Hypothetical
           protein C49H3.3 protein.
          Length = 109

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 166 DLAHTEDPGAVH*QAAEVTEHATINSQTFHTSDSS 270
           D   T+  G  + +  EVT  ATIN++T    D S
Sbjct: 43  DAEKTKTDGTANEEKMEVTSQATINTKTLKKKDGS 77


>U55363-12|AAA97969.1|  320|Caenorhabditis elegans Hypothetical
           protein ZC404.11 protein.
          Length = 320

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 8/85 (9%)
 Frame = -1

Query: 237 NSSVFCNFGXLSMNGSWIFCMCEVYPGGVCN---PS-----FCVCV*YRLKNGAGVSNHM 82
           + SVF +   LS+    +F    ++  G C    PS     F + +  R+K G   SN +
Sbjct: 154 DGSVFLDISPLSLANDCLFLKTSIFFSGSCFKILPSILMSMFSIIILIRIKAGKQRSNSL 213

Query: 81  WHRLKNDDGDDKPCLNCVIYVAVVF 7
            H   + D         +  V VVF
Sbjct: 214 SHNQTDQDAQIDRSTRFIQVVVVVF 238


>U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical
           protein B0222.9 protein.
          Length = 1217

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 216 FGXLSMNGSWIFCMCEVYPGGVCNPSF 136
           FG    N SWI CMC +    +  P++
Sbjct: 708 FGGKVNNASWIACMCAIVAKKLNRPTY 734


>Z70267-1|CAA94211.1|  307|Caenorhabditis elegans Hypothetical
           protein K04C1.1 protein.
          Length = 307

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +2

Query: 47  LSSPSSFFNRCHIWFDTPAPFFSRYHTQTQKL 142
           L + S FF R   W D   PF S   T TQ L
Sbjct: 234 LKNSSEFFERLVDWIDLLVPFASDALTLTQPL 265


>AF039053-16|AAC25869.1|  497|Caenorhabditis elegans Cytochrome p450
           family protein 33C1 protein.
          Length = 497

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 32  QFKHGLSSPSSFFNRCHIWFDTPAPFFSR 118
           + KH + SP+  F + HI+     P F++
Sbjct: 195 ELKHIIDSPAEIFGKLHIFLAMNIPIFAK 223


>AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical
           protein F15E6.6 protein.
          Length = 1228

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 216 FGXLSMNGSWIFCMCEVYPGGVCNPSFCV 130
           FG    N SWI C+C V    +  P++ V
Sbjct: 740 FGGKLNNASWIACICSVVAKKLNRPTYGV 768


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,867,498
Number of Sequences: 27780
Number of extensions: 172743
Number of successful extensions: 449
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)