Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5j18
         (115 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P41658 Cluster: Late expression factor 5; n=13; Nucleop...    74   6e-13
UniRef50_Q77K58 Cluster: Lef5; n=4; Nucleopolyhedrovirus|Rep: Le...    36   0.24 

>UniRef50_P41658 Cluster: Late expression factor 5; n=13;
           Nucleopolyhedrovirus|Rep: Late expression factor 5 -
           Autographa californica nuclear polyhedrosis virus
           (AcMNPV)
          Length = 265

 Score = 74.1 bits (174), Expect = 6e-13
 Identities = 34/34 (100%), Positives = 34/34 (100%)
 Frame = -3

Query: 104 ILNDKVIYLQNSNKNKLFELSGLSLKSCRHDFVT 3
           ILNDKVIYLQNSNKNKLFELSGLSLKSCRHDFVT
Sbjct: 206 ILNDKVIYLQNSNKNKLFELSGLSLKSCRHDFVT 239


>UniRef50_Q77K58 Cluster: Lef5; n=4; Nucleopolyhedrovirus|Rep: Lef5
           - Helicoverpa armigera NPV
          Length = 315

 Score = 35.5 bits (78), Expect = 0.24
 Identities = 16/37 (43%), Positives = 27/37 (72%), Gaps = 3/37 (8%)
 Frame = -3

Query: 104 ILNDKVIY---LQNSNKNKLFELSGLSLKSCRHDFVT 3
           IL D++I    + +S K KL+ ++G+SL++C+H FVT
Sbjct: 249 ILTDELILFKPINSSLKYKLYSINGMSLRACQHSFVT 285


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,698,123
Number of Sequences: 1657284
Number of extensions: 722818
Number of successful extensions: 2215
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2215
length of database: 575,637,011
effective HSP length: 18
effective length of database: 545,805,899
effective search space used: 10370312081
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)