Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5j08
         (557 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7JWG9 Cluster: 39S ribosomal protein L52, mitochondria...    56   7e-07
UniRef50_UPI00015B51FE Cluster: PREDICTED: similar to putative m...    44   0.002
UniRef50_Q56FJ0 Cluster: Putative mitochondrial ribosomal protei...    44   0.002
UniRef50_Q4V7Q1 Cluster: 39S ribosomal protein L52, mitochondria...    44   0.003
UniRef50_Q86TS9 Cluster: 39S ribosomal protein L52, mitochondria...    41   0.017
UniRef50_Q4S0T4 Cluster: Chromosome undetermined SCAF14779, whol...    40   0.039
UniRef50_Q7Q945 Cluster: ENSANGP00000013209; n=1; Anopheles gamb...    37   0.28 
UniRef50_Q1HQF0 Cluster: Mitochondrial ribosomal protein L52; n=...    35   1.5  

>UniRef50_Q7JWG9 Cluster: 39S ribosomal protein L52, mitochondrial
           precursor; n=2; Sophophora|Rep: 39S ribosomal protein
           L52, mitochondrial precursor - Drosophila melanogaster
           (Fruit fly)
          Length = 126

 Score = 55.6 bits (128), Expect = 7e-07
 Identities = 27/51 (52%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
 Frame = +1

Query: 130 TITGLRSFS-SCSALFTKNWRVARGLPVNRNAEGILTDGPDYTFLDGRPTP 279
           T T  RS + +      + WR A+GLP N NA G LT+ PDYT+LDGRPTP
Sbjct: 14  TSTAQRSIALTAPRAIDQKWRAAKGLPENPNAFGPLTNLPDYTYLDGRPTP 64



 Score = 36.3 bits (80), Expect = 0.48
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = +3

Query: 321 AEQIVTLSSELQFAKDRYXXXXXXXXXXXXXXLNNRLKPKGMMLQKK 461
           A +IV LS EL+FAK R+              + ++LKPKG  L KK
Sbjct: 80  ATRIVELSGELEFAKQRHERLKANAESEKQRLIRSKLKPKGHFLLKK 126


>UniRef50_UPI00015B51FE Cluster: PREDICTED: similar to putative
           mitochondrial ribosomal protein L52; n=1; Nasonia
           vitripennis|Rep: PREDICTED: similar to putative
           mitochondrial ribosomal protein L52 - Nasonia
           vitripennis
          Length = 136

 Score = 44.4 bits (100), Expect = 0.002
 Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 142 LRSFS-SCSALFTKNWRVARGLPVNRNAEGILTDGPDYTFLDGRPTPF 282
           LR F  S +      WR  R LP N N+ G LT+ PDY+F D RP P+
Sbjct: 20  LRDFHVSTATCLNHKWRKERKLPSNPNSFGPLTNLPDYSFQDNRPVPY 67


>UniRef50_Q56FJ0 Cluster: Putative mitochondrial ribosomal protein
           L52; n=1; Lysiphlebus testaceipes|Rep: Putative
           mitochondrial ribosomal protein L52 - Lysiphlebus
           testaceipes (Greenbugs aphid parastoid)
          Length = 134

 Score = 44.0 bits (99), Expect = 0.002
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = +1

Query: 130 TITGLRSF-SSCSALFTKNWRVARGLPVNRNAEGILTDGPDYTFLDGRPTPF 282
           T + ++ F ++C +   + WR  + L  N N  G LT+ PDY+F DGRP PF
Sbjct: 16  TFSMIKGFHTTCISQIDQEWRREQRLTRNPNRFGPLTNLPDYSFADGRPVPF 67


>UniRef50_Q4V7Q1 Cluster: 39S ribosomal protein L52, mitochondrial
           precursor; n=2; Xenopus|Rep: 39S ribosomal protein L52,
           mitochondrial precursor - Xenopus laevis (African clawed
           frog)
          Length = 145

 Score = 43.6 bits (98), Expect = 0.003
 Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
 Frame = +1

Query: 46  LVFIFPFKYTSKQ*NQRMNNLTGNKILKTITGLRSF-SSCSALFTKNWRVARGLPVNRNA 222
           L++  P  Y S    + +     N +  + TG RS  SS      ++WRV RG   + + 
Sbjct: 3   LLYCCPGFYLSSSVTRLLCVRLRNSVDLSRTGNRSVHSSTLRCAGQDWRVRRGFARSGSE 62

Query: 223 EGILTDGPDYTFLDGRPTP 279
            G LTD PD++F DGRP P
Sbjct: 63  YGPLTDLPDWSFADGRPAP 81


>UniRef50_Q86TS9 Cluster: 39S ribosomal protein L52, mitochondrial
           precursor; n=18; Theria|Rep: 39S ribosomal protein L52,
           mitochondrial precursor - Homo sapiens (Human)
          Length = 123

 Score = 41.1 bits (92), Expect = 0.017
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +1

Query: 136 TGLRSFS-SCSALFTKNWRVARGLPVNRNAEGILTDGPDYTFLDGRPTP 279
           TG+R    S +A     WR+ +GL  N +  G LT+ PD+++ DGRP P
Sbjct: 10  TGVRRLHCSVAAWAGGQWRLQQGLAANPSGYGPLTELPDWSYADGRPAP 58


>UniRef50_Q4S0T4 Cluster: Chromosome undetermined SCAF14779, whole
           genome shotgun sequence; n=3; Clupeocephala|Rep:
           Chromosome undetermined SCAF14779, whole genome shotgun
           sequence - Tetraodon nigroviridis (Green puffer)
          Length = 122

 Score = 39.9 bits (89), Expect = 0.039
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +1

Query: 154 SSCSALFTKNWRVARGLPVNRNAEGILTDGPDYTFLDGRPTP 279
           ++C+A   + WR   GL       G LTD PD+++ DGRP P
Sbjct: 22  TTCAAPIGEKWRKEHGLARTGTEYGPLTDLPDWSYADGRPAP 63


>UniRef50_Q7Q945 Cluster: ENSANGP00000013209; n=1; Anopheles gambiae
           str. PEST|Rep: ENSANGP00000013209 - Anopheles gambiae
           str. PEST
          Length = 89

 Score = 37.1 bits (82), Expect = 0.28
 Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +3

Query: 321 AEQIVTLSSELQFAKDRYXXXXXXXXXXXXXXLNNRLKPKG-MMLQKK 461
           A+QIVTLS E+ FA +R+              L  +LKPKG ++LQKK
Sbjct: 42  AKQIVTLSKEMDFAVERHQRNMTEAEETKQKLLAAKLKPKGHLLLQKK 89



 Score = 35.5 bits (78), Expect = 0.85
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +1

Query: 211 NRNAEGILTDGPDYTFLDGRPTPF 282
           N N   +LT  PDYT++DGR TPF
Sbjct: 4   NPNKSSLLTHLPDYTYMDGRVTPF 27


>UniRef50_Q1HQF0 Cluster: Mitochondrial ribosomal protein L52; n=1;
           Aedes aegypti|Rep: Mitochondrial ribosomal protein L52 -
           Aedes aegypti (Yellowfever mosquito)
          Length = 129

 Score = 34.7 bits (76), Expect = 1.5
 Identities = 15/23 (65%), Positives = 17/23 (73%)
 Frame = +1

Query: 211 NRNAEGILTDGPDYTFLDGRPTP 279
           N N  G LTD PDY+FL+GR TP
Sbjct: 45  NPNKSGPLTDLPDYSFLNGRVTP 67



 Score = 34.3 bits (75), Expect = 2.0
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +3

Query: 321 AEQIVTLSSELQFAKDRYXXXXXXXXXXXXXXLNNRLKPKGMMLQKK 461
           A +IVT+S E+ +A +RY              ++N LKPKG  L  K
Sbjct: 83  ANKIVTMSKEMDYAVERYKSLQEEKQNRNKKIVSNYLKPKGFALLSK 129


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 422,152,013
Number of Sequences: 1657284
Number of extensions: 7035115
Number of successful extensions: 16282
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16271
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37071859483
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)