Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5j08
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   2.5  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    27   2.5  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    27   2.5  
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    26   4.3  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    25   7.5  
SPAC15A10.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   10.0 

>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 538 QK*QYSLFQFLIHLQLLYKYIFYDKFFFCNII 443
           QK Q S+ + LI  +L  KY+FY  F + + I
Sbjct: 495 QKEQKSVDKHLIRNKLCEKYLFYSNFIWISFI 526


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 43  FLVFIFPFKYTSKQ*NQRMNNLTGNKILKTITGLRS 150
           F +    FK    Q ++ + N+ GN   +T+TG R+
Sbjct: 740 FFIAAVAFKIQMLQLSKNLTNIAGNSWARTLTGTRA 775


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 37  NYFLVFIFPFKYTSKQ*NQRMNNLTGNKILKTITGLRSFSSCSAL 171
           NYFL F F F + S      M++   +K+L  +   +SF   S L
Sbjct: 260 NYFLWFFFFFSFPSYIIKYLMSHSRRSKLLSAVFSKKSFLIVSVL 304


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 421 TTDSNQKE*CCRRKIYHKKCIC 486
           TT + QK   CRRK++  K IC
Sbjct: 236 TTAATQKCPVCRRKVHPNKVIC 257


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 520 LFQFLIHLQLLYKYIFYDKFFFCNI 446
           LFQ   ++QL   Y+ Y+K   C I
Sbjct: 219 LFQGFYYMQLNVYYVLYEKMSHCEI 243


>SPAC15A10.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 190

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = +3

Query: 174 YEKLARRKR----SSSEPECRRNSDRWPGLHL 257
           +EK+  RKR    SSS+P+       WPG+ +
Sbjct: 128 WEKVPLRKRIKIISSSQPDDNDEESTWPGVFI 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,821,579
Number of Sequences: 5004
Number of extensions: 30982
Number of successful extensions: 75
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)