Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5j08
         (557 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    25   2.2  
AY146740-1|AAO12100.1|  139|Anopheles gambiae odorant-binding pr...    23   6.8  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    23   9.0  

>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +1

Query: 109 TGNKILKTITGLRSFSSCSALFTKNWRVARGLPVNRNAEGIL 234
           TGN +LKT       S C++LF  + + A  +        +L
Sbjct: 524 TGNLLLKTAGATGHLSCCNSLFLNDLQQAAAVTTGATTADLL 565


>AY146740-1|AAO12100.1|  139|Anopheles gambiae odorant-binding
           protein AgamOBP9 protein.
          Length = 139

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 279 RCRSSIKEGVVRAIGQNSFGIPVHW 205
           R  + ++E +V+  G N+ G   HW
Sbjct: 92  RDANEVREEIVKCAGSNTDGNVCHW 116


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 151 FSSCSALFTKNWRVARGLPVNRNAEGILT 237
           F SC ALF    ++A+  PV   A  +L+
Sbjct: 53  FGSCCALFGVQSKLAQKRPVTSPAPPVLS 81


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 453,426
Number of Sequences: 2352
Number of extensions: 7483
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 52142868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)