Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5j08
         (557 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113553-1|AAM29558.1|  126|Drosophila melanogaster RH01479p pro...    56   4e-08
AE013599-478|AAF59209.1|  126|Drosophila melanogaster CG1577-PA ...    56   4e-08

>AY113553-1|AAM29558.1|  126|Drosophila melanogaster RH01479p
           protein.
          Length = 126

 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 27/51 (52%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
 Frame = +1

Query: 130 TITGLRSFS-SCSALFTKNWRVARGLPVNRNAEGILTDGPDYTFLDGRPTP 279
           T T  RS + +      + WR A+GLP N NA G LT+ PDYT+LDGRPTP
Sbjct: 14  TSTAQRSIALTAPRAIDQKWRAAKGLPENPNAFGPLTNLPDYTYLDGRPTP 64



 Score = 36.3 bits (80), Expect = 0.028
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = +3

Query: 321 AEQIVTLSSELQFAKDRYXXXXXXXXXXXXXXLNNRLKPKGMMLQKK 461
           A +IV LS EL+FAK R+              + ++LKPKG  L KK
Sbjct: 80  ATRIVELSGELEFAKQRHERLKANAESEKQRLIRSKLKPKGHFLLKK 126


>AE013599-478|AAF59209.1|  126|Drosophila melanogaster CG1577-PA
           protein.
          Length = 126

 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 27/51 (52%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
 Frame = +1

Query: 130 TITGLRSFS-SCSALFTKNWRVARGLPVNRNAEGILTDGPDYTFLDGRPTP 279
           T T  RS + +      + WR A+GLP N NA G LT+ PDYT+LDGRPTP
Sbjct: 14  TSTAQRSIALTAPRAIDQKWRAAKGLPENPNAFGPLTNLPDYTYLDGRPTP 64



 Score = 36.3 bits (80), Expect = 0.028
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = +3

Query: 321 AEQIVTLSSELQFAKDRYXXXXXXXXXXXXXXLNNRLKPKGMMLQKK 461
           A +IV LS EL+FAK R+              + ++LKPKG  L KK
Sbjct: 80  ATRIVELSGELEFAKQRHERLKANAESEKQRLIRSKLKPKGHFLLKK 126


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,710,593
Number of Sequences: 53049
Number of extensions: 315198
Number of successful extensions: 661
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2151905496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)