Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5j07
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39678-8|AAK39208.2|  228|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z75544-3|CAA99879.1|  212|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin pro...    28   5.6  
Z46343-7|CAE17971.2|  187|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U39678-8|AAK39208.2|  228|Caenorhabditis elegans Hypothetical
           protein C39D10.6 protein.
          Length = 228

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
 Frame = +2

Query: 293 VFLMQLRVAAQGTVVSALTIGLAYTLA-KEHLFKDSKKE*LLTGFKLTISNFFCLGNLHI 469
           +FL+ + V A   +  A  +G   T + +E L  D      L  F +    F CLG L  
Sbjct: 122 IFLISIAVGASMVIDLARNVGNVDTASVQEKLDAD------LALFTVLFILFLCLGGLIQ 175

Query: 470 AHFKDLQY*IRPLLSDKSHVFKVH 541
           A+F ++ Y     L D+ + F  H
Sbjct: 176 AYFAEVIYSFHNFLKDRENSFSFH 199


>Z75544-3|CAA99879.1|  212|Caenorhabditis elegans Hypothetical
           protein K02A11.2 protein.
          Length = 212

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/59 (27%), Positives = 35/59 (59%)
 Frame = +2

Query: 35  CCNI*FYSNSDITAYTLVLFLWILISLSDTMTNSQQIFEYNEESQSERLARKSKDSPFM 211
           CC +  +SN +I +   ++ +      ++T+++SQ + E +EES+ E +  ++K +P M
Sbjct: 13  CCEM--FSNCNIYSIHYIMCMTSKPQKTETISSSQSVTESSEESEKEAIIIETK-NPLM 68


>Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical
           protein F33C8.1b protein.
          Length = 1234

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 213 IINGESFDFLASLSDCDSSLYSNIC 139
           + N  +F+F  SLS CD   Y+ +C
Sbjct: 51  LTNHANFEFEKSLSSCDKPCYNGVC 75


>Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical
           protein F33C8.1a protein.
          Length = 1271

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 213 IINGESFDFLASLSDCDSSLYSNIC 139
           + N  +F+F  SLS CD   Y+ +C
Sbjct: 51  LTNHANFEFEKSLSSCDKPCYNGVC 75


>AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin
           protein.
          Length = 1329

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 213 IINGESFDFLASLSDCDSSLYSNIC 139
           + N  +F+F  SLS CD   Y+ +C
Sbjct: 51  LTNHANFEFEKSLSSCDKPCYNGVC 75


>Z46343-7|CAE17971.2|  187|Caenorhabditis elegans Hypothetical
           protein T23F11.6 protein.
          Length = 187

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 277 KNEH*CIPNAAPSCCPRHCSVSSYNRAGI 363
           K E  C+ N  P  C   CS  +YN + I
Sbjct: 84  KMEQCCVDNLLPERCMGFCSFETYNESSI 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,551,350
Number of Sequences: 27780
Number of extensions: 290495
Number of successful extensions: 522
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)