Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5j04
         (341 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    82   3e-17
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    30   0.11 
SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe...    29   0.20 
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual             26   1.8  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    25   2.4  
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual     24   5.6  
SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    24   5.6  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    23   9.8  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 81.8 bits (193), Expect = 3e-17
 Identities = 35/57 (61%), Positives = 47/57 (82%)
 Frame = +3

Query: 99  GSLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEKIQEFEDFVQSVDIAAFNKI 269
           G +WG SKLVPVG+G+NK QI  V+EDDKVS++ L E+++ FED+VQS DIAA +K+
Sbjct: 158 GLVWGLSKLVPVGFGVNKFQINLVVEDDKVSLEALQEELEGFEDYVQSTDIAAMSKL 214


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 29.9 bits (64), Expect = 0.11
 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 12/66 (18%)
 Frame = -1

Query: 317 LIEKVALINITCYGCLDFVKCSN-VNRLYKI-FKF----------LNFFCQQINRNFVVL 174
           +I+ ++L+   C+   + +KCSN VN  Y + F F          LN+  Q+I  N ++L
Sbjct: 104 IIDAISLLVARCFSRANPIKCSNQVNTQYSVSFLFTIMASVLISVLNYISQKIFLNGLIL 163

Query: 173 DDTHNL 156
            ++HN+
Sbjct: 164 GNSHNV 169


>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 422

 Score = 29.1 bits (62), Expect = 0.20
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -1

Query: 293 NITCYGCLDFVKCSNVNRLYKIFKFLNFFCQQINRNFVVLDDTHNLQFIYAI 138
           NITC   LD +   N N +Y   + +      I ++   L D H   FIY I
Sbjct: 82  NITCIYDLDIINPYNFNEVYIYEELMEADLNAIIKSGQPLTDAHFQSFIYQI 133


>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 144 INKLQIMCVIEDDKVSVDLLTEKIQEFEDFVQSVDIAAFNK 266
           INK Q+M   E ++ ++DLL++   EF   + + D+    K
Sbjct: 151 INKWQVMTAFELNEENLDLLSQYCSEF--LIHAADVEGLCK 189


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 233 CTIC*HCCI*QNLNSHNM*YL*VQLFQ 313
           C++C  C   QNLNSH+   L  +LFQ
Sbjct: 466 CSLCYLCLYAQNLNSHSSQSL-FELFQ 491


>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 100 GLSGEPPNLCLLGMA*INCKLCVSSRT 180
           G S   PN+C L +    C+ C++S T
Sbjct: 14  GCSSGIPNVCCLTLEKPTCRTCLASLT 40


>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 117 SKLVPVGYGINKLQIMCVIEDDKVSVDLLTEKIQEFEDFVQSV 245
           S    +GY  +K+ I    E  + SV   TE  Q F+DF+  V
Sbjct: 34  SSFYVLGYARSKIPIGEFRESIRESVKPDTESKQVFQDFIDRV 76


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 158 LQFIYAIPNRHKFGGSPERP 99
           +QF Y +  R    GSPE+P
Sbjct: 338 IQFSYELTKREHKHGSPEKP 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,304,656
Number of Sequences: 5004
Number of extensions: 23429
Number of successful extensions: 60
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)