Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5j04
(341 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631... 74 3e-14
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890... 74 3e-14
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615... 73 6e-14
10_08_1010 + 22230329-22230658,22231033-22231298,22231411-222315... 29 0.72
08_02_1041 - 23876849-23876959,23877853-23878046,23878621-238786... 27 3.9
09_02_0602 - 11118788-11119178,11119262-11119451,11119590-111196... 26 6.7
09_02_0567 + 10745172-10745522 26 6.7
09_01_0172 - 2486102-2486860 26 6.7
07_01_0623 + 4638952-4639024,4640422-4640439,4641312-4641660,464... 26 6.7
04_01_0234 + 2963364-2963520,2963931-2964053,2964134-2964205,296... 26 6.7
03_05_0299 + 22887603-22887797,22887891-22887986,22888089-228881... 26 6.7
01_01_0359 + 2829325-2832076,2832223-2832593,2833335-2833695,283... 26 6.7
>03_04_0016 +
16461542-16461566,16462701-16462732,16463015-16463100,
16463189-16463305,16463399-16463474,16463695-16463818,
16464482-16464595,16464700-16464947
Length = 273
Score = 74.1 bits (174), Expect = 3e-14
Identities = 39/60 (65%), Positives = 42/60 (70%), Gaps = 3/60 (5%)
Frame = +3
Query: 99 GSLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEK---IQEFEDFVQSVDIAAFNKI 269
G LWGASKLVPVGYGI KLQIM I DD VSVD L E + +F+QS DI AFNKI
Sbjct: 186 GLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEFIQSCDIVAFNKI 245
>07_03_1580 +
27888275-27888360,27888755-27888871,27888964-27889045,
27889710-27889821,27889958-27890071,27890163-27890326
Length = 224
Score = 73.7 bits (173), Expect = 3e-14
Identities = 40/60 (66%), Positives = 43/60 (71%), Gaps = 3/60 (5%)
Frame = +3
Query: 99 GSLWGASKLVPVGYGINKLQIMCVIEDDKVSVD-LLTEKIQE--FEDFVQSVDIAAFNKI 269
G WGASKLVPVGYGI KLQIM I DD VSVD L+ E + E +FVQS DI AFNKI
Sbjct: 165 GLTWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEHLTEEPINEFVQSCDIVAFNKI 224
>07_03_1260 -
25260872-25261101,25261199-25261312,25261473-25261596,
25261755-25261839,25261917-25262033,25262122-25262207
Length = 251
Score = 72.9 bits (171), Expect = 6e-14
Identities = 38/60 (63%), Positives = 42/60 (70%), Gaps = 3/60 (5%)
Frame = +3
Query: 99 GSLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEK---IQEFEDFVQSVDIAAFNKI 269
G LWGASKLVPVGYGI KLQIM I DD VSVD L E + +++QS DI AFNKI
Sbjct: 170 GLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEYIQSCDIVAFNKI 229
>10_08_1010 +
22230329-22230658,22231033-22231298,22231411-22231528,
22231842-22232050,22232297-22232750
Length = 458
Score = 29.5 bits (63), Expect = 0.72
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -3
Query: 195 QQKLCRPR*HT*FAVYLCHTQQAQVWRLPRETLGG 91
++++ RPR H+ FAV H A V LPR LGG
Sbjct: 23 RRRVPRPRGHSRFAVRWEHRAAAVVLLLPRALLGG 57
>08_02_1041 -
23876849-23876959,23877853-23878046,23878621-23878691,
23878956-23879009,23879051-23879187
Length = 188
Score = 27.1 bits (57), Expect = 3.9
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +3
Query: 144 INKLQIMC-VIEDDKVSVDLLTEKIQEFEDFVQSVDIAAFNKI 269
+ K++ + V+++D V+ +TEKI+ F D + + F +I
Sbjct: 129 VEKIEYIAEVVDEDAEKVEAITEKIENFSDKIDAKVEPIFTEI 171
>09_02_0602 -
11118788-11119178,11119262-11119451,11119590-11119658,
11119890-11120016,11120134-11120399,11120760-11120872,
11121693-11121764,11121860-11121998,11124277-11124360,
11125278-11125771,11127604-11128187
Length = 842
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 230 IFKFLNFFCQQINRNFVVLDDTHNLQFIYA 141
+F+F F I NFV LD T+ +F+ A
Sbjct: 482 VFRFSYLFNVDIGDNFVHLDSTYGPEFLNA 511
>09_02_0567 + 10745172-10745522
Length = 116
Score = 26.2 bits (55), Expect = 6.7
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +3
Query: 102 SLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEKIQEFEDFVQSVDIAAFNK 266
SL L+ GY K++ DDKV +++ +K ED + VDI+A +
Sbjct: 61 SLLDVRLLMTPGYDEKKVEWRSKKVDDKVWLEVTIKKKAPTEDGTRIVDISAIEE 115
>09_01_0172 - 2486102-2486860
Length = 252
Score = 26.2 bits (55), Expect = 6.7
Identities = 7/15 (46%), Positives = 13/15 (86%)
Frame = -1
Query: 311 EKVALINITCYGCLD 267
+ + ++++TCYGCLD
Sbjct: 220 QAIFVVHLTCYGCLD 234
>07_01_0623 +
4638952-4639024,4640422-4640439,4641312-4641660,
4643917-4643985,4645587-4645722,4646835-4646870
Length = 226
Score = 26.2 bits (55), Expect = 6.7
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = -1
Query: 329 CKCDLIEKVALINITCYGCLDFVKCSNVNRLYKIFKFL-NFFCQQIN-RNFVVLDDTH 162
CKC++ + I C C D+ S + K K L +FFCQ N + +++H
Sbjct: 149 CKCEMPYNPDDLMIQCEECSDWFHPSCIGMTIKDAKKLEHFFCQSCTAENGKMAENSH 206
>04_01_0234 +
2963364-2963520,2963931-2964053,2964134-2964205,
2964709-2964979,2965301-2965380,2966075-2967292,
2968137-2968315
Length = 699
Score = 26.2 bits (55), Expect = 6.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 6 LTHFLTQPCGYLEKSCYTKRNYGCR 80
+ H L +PCG L K+C + CR
Sbjct: 266 IKHMLHEPCGALNKNCACMVDGECR 290
>03_05_0299 +
22887603-22887797,22887891-22887986,22888089-22888172,
22888573-22888733,22889458-22889575,22889914-22890049,
22890351-22890529,22890690-22890929
Length = 402
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -1
Query: 314 IEKVALINITCYGCLDFVKCSNVNRLYKIFKFLNFFCQQINRNFVV 177
+ + + N T YG ++FV + V L KI N + + +F V
Sbjct: 219 VRYIGVSNETSYGVMEFVHAAKVQGLPKIVSIQNSYSLIVRCHFEV 264
>01_01_0359 +
2829325-2832076,2832223-2832593,2833335-2833695,
2833799-2833868,2834021-2834108,2834325-2834580,
2834758-2834883,2835217-2835425
Length = 1410
Score = 26.2 bits (55), Expect = 6.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 96 PGSLWGASKLVPVGYGINKLQ 158
P SLW S L +G G+N LQ
Sbjct: 232 PHSLWNLSALRVIGVGLNMLQ 252
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,387,406
Number of Sequences: 37544
Number of extensions: 148490
Number of successful extensions: 325
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -