Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5j04
         (341 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z95559-20|CAB63360.2|  263|Caenorhabditis elegans Hypothetical p...    83   7e-17
L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical pr...    83   7e-17
AF106576-4|AAC78176.1|  473|Caenorhabditis elegans Hypothetical ...    28   2.0  
Z81127-9|CAB03394.3|  735|Caenorhabditis elegans Hypothetical pr...    27   2.7  
Z81056-11|CAB02911.3|  735|Caenorhabditis elegans Hypothetical p...    27   2.7  
AL021497-8|CAA16409.1|  334|Caenorhabditis elegans Hypothetical ...    27   2.7  
U61955-7|AAV58862.1|  456|Caenorhabditis elegans Hypothetical pr...    27   3.5  
U61955-6|AAC24408.2|  505|Caenorhabditis elegans Hypothetical pr...    27   3.5  
AF098997-1|AAC68718.1|  160|Caenorhabditis elegans Hypothetical ...    27   3.5  
AF012437-1|AAC47715.1| 1846|Caenorhabditis elegans insulin recep...    27   4.7  
AC084196-6|AAK29947.2| 1843|Caenorhabditis elegans Abnormal daue...    27   4.7  
U50312-10|AAY86208.1|  356|Caenorhabditis elegans Hypothetical p...    26   6.1  
U40959-5|AAA81769.1|  531|Caenorhabditis elegans Udp-glucuronosy...    26   8.1  
AF025467-8|ABR92604.1|  443|Caenorhabditis elegans X-box promote...    26   8.1  
AF025467-7|AAB71036.2|  485|Caenorhabditis elegans X-box promote...    26   8.1  

>Z95559-20|CAB63360.2|  263|Caenorhabditis elegans Hypothetical
           protein Y41E3.10a protein.
          Length = 263

 Score = 82.6 bits (195), Expect = 7e-17
 Identities = 41/58 (70%), Positives = 47/58 (81%), Gaps = 1/58 (1%)
 Frame = +3

Query: 99  GSLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEKIQ-EFEDFVQSVDIAAFNKI 269
           G +WG +KL+P+GYGI KLQI+ VIED KVSVD L EKI  +FED VQSVDI AFNKI
Sbjct: 206 GLVWGGAKLIPIGYGIKKLQIITVIEDLKVSVDDLIEKITGDFEDHVQSVDIVAFNKI 263


>L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical
           protein F54H12.6 protein.
          Length = 213

 Score = 82.6 bits (195), Expect = 7e-17
 Identities = 41/58 (70%), Positives = 47/58 (81%), Gaps = 1/58 (1%)
 Frame = +3

Query: 99  GSLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEKIQ-EFEDFVQSVDIAAFNKI 269
           G +WG +KL+P+GYGI KLQI+ VIED KVSVD L EKI  +FED VQSVDI AFNKI
Sbjct: 156 GLVWGGAKLIPIGYGIKKLQIITVIEDLKVSVDDLIEKITGDFEDHVQSVDIVAFNKI 213


>AF106576-4|AAC78176.1|  473|Caenorhabditis elegans Hypothetical
           protein W07E6.2 protein.
          Length = 473

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = +3

Query: 105 LWGASKLVPVGYGINKLQIMC----VIEDDKVSVDLLTEKIQEFEDFVQ 239
           L G+  LVPV    N+LQI+C       DD V +   T +  E  D ++
Sbjct: 19  LGGSGILVPVDISTNELQILCNQLLGSSDDPVPISFFTTEGAEIVDSIR 67


>Z81127-9|CAB03394.3|  735|Caenorhabditis elegans Hypothetical
           protein F09F3.9 protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 116 LQTCACWVWHK*TANYVCH 172
           LQ CA W+WHK   NY+ +
Sbjct: 187 LQRCA-WLWHKLNENYITY 204


>Z81056-11|CAB02911.3|  735|Caenorhabditis elegans Hypothetical
           protein F09F3.9 protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 116 LQTCACWVWHK*TANYVCH 172
           LQ CA W+WHK   NY+ +
Sbjct: 187 LQRCA-WLWHKLNENYITY 204


>AL021497-8|CAA16409.1|  334|Caenorhabditis elegans Hypothetical
           protein Y51A2D.12 protein.
          Length = 334

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -1

Query: 260 KCSNVNRLYKIFKFLNFFCQQINRNFVVLDDTHNL 156
           KC+  NRL + FK   FF +  N N VV+    NL
Sbjct: 294 KCAESNRLLEKFKNHRFFAES-NSNIVVMSLPKNL 327


>U61955-7|AAV58862.1|  456|Caenorhabditis elegans Hypothetical
           protein M03D4.4b protein.
          Length = 456

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -1

Query: 266 FVKCSNVNRLYKIFKFLNFFCQQINRNFV--VLDDTHNLQ 153
           F+   ++NR  KI +   F CQQ  R+F+  V+ D H+L+
Sbjct: 132 FIFKFDLNRHMKIHQERGFSCQQCGRSFLKQVMLDEHHLK 171


>U61955-6|AAC24408.2|  505|Caenorhabditis elegans Hypothetical
           protein M03D4.4a protein.
          Length = 505

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -1

Query: 266 FVKCSNVNRLYKIFKFLNFFCQQINRNFV--VLDDTHNLQ 153
           F+   ++NR  KI +   F CQQ  R+F+  V+ D H+L+
Sbjct: 181 FIFKFDLNRHMKIHQERGFSCQQCGRSFLKQVMLDEHHLK 220


>AF098997-1|AAC68718.1|  160|Caenorhabditis elegans Hypothetical
           protein T10D4.7 protein.
          Length = 160

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
 Frame = -1

Query: 281 YGCLDFVKCSNVNRLYKIFKFLNFFCQQIN--RNFVVLD--DTH-NLQFIYA-IPNRHKF 120
           YGCLD  +C N++  Y I     F+ ++    RN   L+  D+H  L F  + IP     
Sbjct: 19  YGCLDACECDNISE-YTINDAFLFYTEEAGCVRNVTCLNSPDSHIALDFQGSEIPRPLAP 77

Query: 119 GGSPERPWAVLTSPTA 72
              P RP   L  P A
Sbjct: 78  TWKPYRPETYLMPPNA 93


>AF012437-1|AAC47715.1| 1846|Caenorhabditis elegans insulin receptor
           homolog protein.
          Length = 1846

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
 Frame = +1

Query: 4   LLLIFS---PSRVVI*KKVATLKETMAVGDVKTAQGLSGEPPNLCLLGMA*INCKLCVSS 174
           LLL+F+   P   ++ K+   +       D+K      G+P    L G   +NC +   S
Sbjct: 128 LLLLFAFVQPCASIVEKRCGPIDIRNRPWDIKPQWSKLGDPNEKDLAGQRMVNCTVVEGS 187

Query: 175 RTTKFLL 195
            T  F+L
Sbjct: 188 LTISFVL 194


>AC084196-6|AAK29947.2| 1843|Caenorhabditis elegans Abnormal dauer
           formation protein 2 protein.
          Length = 1843

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
 Frame = +1

Query: 4   LLLIFS---PSRVVI*KKVATLKETMAVGDVKTAQGLSGEPPNLCLLGMA*INCKLCVSS 174
           LLL+F+   P   ++ K+   +       D+K      G+P    L G   +NC +   S
Sbjct: 125 LLLLFAFVQPCASIVEKRCGPIDIRNRPWDIKPQWSKLGDPNEKDLAGQRMVNCTVVEGS 184

Query: 175 RTTKFLL 195
            T  F+L
Sbjct: 185 LTISFVL 191


>U50312-10|AAY86208.1|  356|Caenorhabditis elegans Hypothetical
           protein B0222.11 protein.
          Length = 356

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 107 LGSLQTCA-CWVWHK*TANYVCHRGRQSFC*FAD 205
           LG++  C+ CWVW +  + Y      +  C +AD
Sbjct: 241 LGTVSLCSTCWVWRRLPSTYYPAYLNEVVCDYAD 274


>U40959-5|AAA81769.1|  531|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein46 protein.
          Length = 531

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 275 CLDFVKCSNVNRLYKIFKFLNFFCQQIN 192
           C +F+K  ++    K  KF  FF +QIN
Sbjct: 118 CAEFLKMDDIFNELKNAKFDGFFAEQIN 145


>AF025467-8|ABR92604.1|  443|Caenorhabditis elegans X-box promoter
           element regulatedprotein 7, isoform b protein.
          Length = 443

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 189 SVDLLTEKIQEFEDFVQSVDIAAFNK 266
           SVD L+ ++Q F+  +QS+D   FN+
Sbjct: 13  SVDRLSIRVQLFQKGIQSLDFDRFNQ 38


>AF025467-7|AAB71036.2|  485|Caenorhabditis elegans X-box promoter
           element regulatedprotein 7, isoform a protein.
          Length = 485

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 189 SVDLLTEKIQEFEDFVQSVDIAAFNK 266
           SVD L+ ++Q F+  +QS+D   FN+
Sbjct: 13  SVDRLSIRVQLFQKGIQSLDFDRFNQ 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,492,380
Number of Sequences: 27780
Number of extensions: 141742
Number of successful extensions: 397
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)