Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5i19
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   2.4  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    27   3.2  
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    26   5.6  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   5.6  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    25   7.4  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
 Frame = +2

Query: 359  NNYSDPDNENDMLHMTVLNSVFLNEHAKLYYRHLLRNDQAEARKTILNADDVYECVLIKP 538
            NNYS PD   D   M            KLY+    +ND  +  ++I+NA ++ E  ++K 
Sbjct: 2174 NNYSSPDLTEDFKRM-----------EKLYFEK--KNDIQQLERSIVNASNMKEEKMLKN 2220

Query: 539  IRTEHFRS--VDEAGEHNMGVL--KIIIDTVIKYIGKLADDE 652
              +    S  +DE     M     K++  ++  Y+  L++ +
Sbjct: 2221 HHSREMSSFIIDEREYLRMSTFRSKMLTQSITHYLKCLSESD 2262


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
 Frame = +2

Query: 380 NENDMLHMTVLNSVFLNEHAKLYYRHLLRNDQ------AEARKTILNADDVYE 520
           N  + LH TVL  + L   A+ YY+  L N +      AE  KT++   D  E
Sbjct: 449 NSFNTLHKTVLEMLDLQRQAEHYYKRKLDNAKAINALWAENLKTVVEEQDQIE 501


>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 282 LKGVNFTEAQRSNLIGFLVEHI*NNVVI 199
           ++G+N  +    NL+ F VEH+ N+V I
Sbjct: 248 IQGLNCEKGSIGNLLCFAVEHVNNHVEI 275


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
 Frame = +3

Query: 51   FINALHKKTPWT--LNSILGIFLKCNHDERMVRD--GRQPHQ-LCTER*FIFDK 197
            FIN +H  TPW   L S +   L  N     + +   + PHQ LC  R  +F+K
Sbjct: 3961 FINNIHLSTPWAEKLPSKMSNHLHKNSRIVCLSEIHNQLPHQLLCISRSIVFNK 4014


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +2

Query: 371 DPDNENDMLHMTVLN--SVFLNEH 436
           DPDN  D++ MTV N    FL +H
Sbjct: 904 DPDNSRDVIDMTVKNYSLAFLIDH 927


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,497,215
Number of Sequences: 5004
Number of extensions: 47368
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)