Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5i19
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81513-12|CAE17799.1|  417|Caenorhabditis elegans Hypothetical p...    32   0.42 
AF100307-7|AAC68934.1|  353|Caenorhabditis elegans Hypothetical ...    28   6.8  

>Z81513-12|CAE17799.1|  417|Caenorhabditis elegans Hypothetical
           protein F26D2.16 protein.
          Length = 417

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +2

Query: 317 IHPRRANCKVTRPRNNYSDPDNENDM-LHMTVLNSVFLNEHAKLYYRHLLRNDQAEARKT 493
           +H +  NC   R  +++S PD + D+   +  L       HA    R +L  ++  + + 
Sbjct: 148 VHAKELNCSQRRALSSFSQPDRKEDVKKFLNQLLKAIQLRHAGKILRAVLHTNRYRSCER 207

Query: 494 ILNADDVYECVLIKP 538
           I + ++V + ++  P
Sbjct: 208 IFSREEVIDAIVKTP 222


>AF100307-7|AAC68934.1|  353|Caenorhabditis elegans Hypothetical
           protein T12B5.10 protein.
          Length = 353

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +2

Query: 383 ENDMLHMTVLNSVFLNEHA-KLYYRHLLRNDQAEARKTILNADDVYECVLIKPIRTEHFR 559
           E + +     +   L++HA K+  R+   N + +  KT     +  +C+L+K IR  HF 
Sbjct: 141 EENFVERAAKDFKILSKHARKIDIRNFTEN-RRDIIKTFNEIWNTEKCILVKEIRLRHF- 198

Query: 560 SVDE 571
           S DE
Sbjct: 199 SFDE 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,038,955
Number of Sequences: 27780
Number of extensions: 273123
Number of successful extensions: 769
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)