Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5i14
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    26   0.42 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   2.2  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   5.2  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   6.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 196 LRRNIKNLAHNYSDAQVKVREATSNDPWGPSSTL 297
           L+++I NL  + S +   +  +  ND W P  TL
Sbjct: 360 LKQDILNLRTDISSSSSSISSSEENDFWQPKPTL 393


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 369 TLPYHLHDLREGHDVVREVGDLRHE 295
           TL  + HD+ E ++VVR+  D+  E
Sbjct: 252 TLKIYTHDIPETYNVVRKFRDVLDE 276


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 369 TLPYHLHDLREGHDVVREVGDLRHE 295
           TL  + HD+ E ++VVR+  D+  E
Sbjct: 252 TLKIYTHDIPETYNVVRKFRDVLDE 276


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 174 DASECSRSQKEYKEPRTQLFRCSG 245
           +AS+ S  +  +  PR+QL  CSG
Sbjct: 751 NASKHSAKRPSFISPRSQLIICSG 774


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 410 LWS*WSTSSRPAARKWRC 463
           +W+ W  S R A ++W C
Sbjct: 472 VWNSWMPSIRGAIQQWTC 489


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 658 FGSDGALDTPSSPTFPSGESGS 723
           F    A  T +SP++P G S S
Sbjct: 69  FNDSAAAITSTSPSYPGGGSSS 90


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 725 HDPDSPEGKVGLEGVSSAPSL 663
           +DP SP  K+G + +S   SL
Sbjct: 141 YDPYSPNSKIGRDELSQPGSL 161


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +1

Query: 526 KDQGLNVREKAKQLANLLKDDERLKNERARALKAKQRFAQS 648
           KD+    +EK ++   L  + E+L  ER     +++R+++S
Sbjct: 6   KDRNREYKEKDRRYEKLYNEKEKLLEERT----SRKRYSRS 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,094
Number of Sequences: 438
Number of extensions: 3612
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)