Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5i09
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    27   2.7  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    26   4.7  
SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30 family|Sc...    26   6.3  
SPAC12G12.05c |taf9||transcription initiation factor Taf9|Schizo...    26   6.3  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    26   6.3  
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    25   8.3  

>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +2

Query: 440 PFVPKTNLK--TCHECGHHHEQGRLCAKG 520
           P VP+T      C+ CG +  Q R C KG
Sbjct: 7   PTVPQTTRPGPRCYNCGENGHQARECTKG 35


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -2

Query: 604 WVDFCNRFLLNHCGLSFFISTILLPFQNSFCT*SALFVVVTTLMA 470
           +V    R LL++    F +   L  F+NS C+ S L  +VT+L+A
Sbjct: 148 FVSRVRRALLSNPEQFFKLQDSLRKFKNSECSLSELQTIVTSLLA 192


>SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 284

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 111 KETLKKKIKHCNHSTY 158
           KETL+ ++  C HSTY
Sbjct: 165 KETLRNQVARCLHSTY 180


>SPAC12G12.05c |taf9||transcription initiation factor
           Taf9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 163

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 248 SLFGQPPKELALAVSVNQQPKPTPK 322
           S  G PPKE  L +++ +  KP P+
Sbjct: 85  SFTGPPPKEFLLELAMERNRKPLPQ 109


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +3

Query: 543 VEMKKERPQWFSKNLLQKSTQQPSKSTDVKPT 638
           VE  K   Q  SK       Q+PSK  +VKPT
Sbjct: 425 VETPKPEAQPVSKPKESAEEQKPSKEPEVKPT 456


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +2

Query: 386 TVEKRLNRKFGWPEYVWKPFV 448
           TV +++++K+  PEY+WKP V
Sbjct: 359 TVGRQVSKKY--PEYLWKPQV 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,004,821
Number of Sequences: 5004
Number of extensions: 62019
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)