Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5i09
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1788 + 29523216-29524867,29525048-29525075                       28   8.6  
04_01_0353 - 4623910-4624812                                           28   8.6  

>07_03_1788 + 29523216-29524867,29525048-29525075
          Length = 559

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = +2

Query: 239 ILLSLFGQPPKELALAVSVNQQP-KPTPKAFSIHDLIGDGFLLAVPKFRRTVEKRLNRKF 415
           +L+S FG   K LA   +   +P +P      ++D   D F  A+       E+R+    
Sbjct: 91  LLVSFFGD--KALAWCDAAQLRPYEPYFPVAELYDGEADDFDAALDASLLEFERRVELAL 148

Query: 416 GWPEYVWKPFVPKTNLKTCHECGHH 490
             P  + +PF+P+  +   H+   H
Sbjct: 149 TAPGRIARPFLPRDFIALLHDLAAH 173


>04_01_0353 - 4623910-4624812
          Length = 300

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 522 IPFAHSLPCSWW 487
           +PF+H LP SWW
Sbjct: 52  LPFSHRLPLSWW 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,862,716
Number of Sequences: 37544
Number of extensions: 347865
Number of successful extensions: 882
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)